CF832250

Overview
NameCF832250
Unique NameCF832250
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length728
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1009 contig Csv1_Contig1009:1..728. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: DEFA_ANTMA (Floral homeotic protein DEFICIENS OS=Antirrhinum majus GN=DEFA PE=1 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.873e-25
Identity = 63/158 (39.87%), Postives = 99/158 (62.66%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY--SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKR 710
            M RGKI+IKRIEN TNRQVT+ KRRNGL KKA+ELSVLCDA+VS+I+ SS  +L+EY     + K   D+Y+KA         +  ++ +  Q+   KL     N++   R  +GESL+ L ++++ N+   ++  +  IR +K +++  +I+  +K+
Sbjct:    1 MARGKIQIKRIENQTNRQVTYSKRRNGLFKKAHELSVLCDAKVSIIMISSTQKLHEYISPTTATKQLFDQYQKAVG-----VDLWSSHYEKMQEHLKKLNEVNRNLRREIRQRMGESLNDLGYEQIVNLIEDMDNSLKLIRERKYKVISNQIDTSKKK 153          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD30_ORYSJ (MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25
Identity = 66/166 (39.76%), Postives = 103/166 (62.05%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSV--KSTIDRYKKATADTSNTGSICEANAQFYQ--QEAAKLRIQISNMQNSNRNMLGESLSGLN-FKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDLH 725
            MG+GKIE+KRIE+ T RQVTF KRR G LKKA EL+VLCDA+V ++VFS +G+L+++ +  V       RY+  T +T     + E N    Q   E  +LR +I  ++ S R   GE LS ++   EL  ++ +LE  +S++ ++K+EL+  ++E M++    +H
Sbjct:    1 MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSPPVILMELFHRYEITTRNT----RLQETNRDDEQMVMEITRLRNEIDQLEASLRRQTGEDLSSVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVH 162          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25
Identity = 62/159 (38.99%), Postives = 102/159 (64.15%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLS-GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            M RGK++++RIEN  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+  +  +++  I+RYK A+ + +N    C       +QEA  L+ +I+ +Q   R + G   +  +  +EL  +E  LE  +  IRS K +++  EI+ ++ +E
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANA---CGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKE 156          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 114.775 bits (286), Expect = 4.900e-25
Identity = 62/159 (38.99%), Postives = 102/159 (64.15%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLS-GLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            M RGK++++RIEN  +RQVTFCKRR GLLKKA ELS+LC+A++ +I+FS+ G+LY+  +  +++  I+RYK A+ + +N    C       +QEA  L+ +I+ +Q   R + G   +  +  +EL  +E  LE  +  IRS K +++  EI+ ++ +E
Sbjct:    1 MARGKVQLRRIENPVHRQVTFCKRRAGLLKKARELSILCEADIGIIIFSAHGKLYDLATTGTMEELIERYKSASGEQANA---CGDQRMDPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKE 156          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: PIST_ARATH (Floral homeotic protein PISTILLATA OS=Arabidopsis thaliana GN=PI PE=1 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 8.358e-25
Identity = 60/151 (39.74%), Postives = 97/151 (64.24%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVK--STIDRYKKATADTSNTGSICEANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAE 689
            MGRGKIEIKRIEN  NR VTF KRRNGL+KKA E++VLCDA+V+LI+F+S G++ +Y   S+   + +D+Y+K +        + +A  +    E  +++ +  ++Q   R++ GE +  LN K L  +E  +E G+ ++R  + E+L ++
Sbjct:    1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCPSMDLGAMLDQYQKLSGK-----KLWDAKHENLSNEIDRIKKENDSLQLELRHLKGEDIQSLNLKNLMAVEHAIEHGLDKVRDHQMEILISK 146          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD22_ORYSJ (MADS-box transcription factor 22 OS=Oryza sativa subsp. japonica GN=MADS22 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.432e-24
Identity = 65/162 (40.12%), Postives = 95/162 (58.64%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEA--AKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 722
            M R + EIKRIE+   RQVTF KRR GL KKA ELSVLCDA+V+LIVFSS G+L  ++++S+   ID+Y      ++N G   + +     + +  A L  Q++      R M GE L GL+  EL+ +E  LE G+ R+   K++    +I  +Q++   L
Sbjct:    1 MARERREIKRIESAAARQVTFSKRRRGLFKKAEELSVLCDADVALIVFSSTGKLSHFASSSMNEIIDKY---NTHSNNLGKAEQPSLDLNLEHSKYAHLNEQLAEASLRLRQMRGEELEGLSIDELQQLEKNLEAGLHRVMLTKDQQFMEQISELQRKSSQL 159          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 3.176e-24
Identity = 66/162 (40.74%), Postives = 101/162 (62.35%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEY-SNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQEAAK----LRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKRE 713
            M RGK++++RIEN  +RQVTFCKRR GLLKKA ELSVLCDA+V +I+FSS+G+L+E  +N ++ + ++RY+   A     G   E  A   QQ A +    LR +I  +Q   R+  G     +   +L  +E  LE  I +IR+ K +++  EI++++ +E
Sbjct:    1 MVRGKVQMRRIENPVHRQVTFCKRRGGLLKKARELSVLCDADVGVIIFSSQGKLHELATNGNMHNLVERYQSNVA-----GGQMEPGALQRQQVAEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKE 157          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD47_ORYSJ (MADS-box transcription factor 47 OS=Oryza sativa subsp. japonica GN=MADS47 PE=1 SV=2)

HSP 1 Score: 110.153 bits (274), Expect = 1.207e-23
Identity = 66/175 (37.71%), Postives = 102/175 (58.29%), Query Frame = 3
Query:  213 GREELSPKRKMG-RGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFYQQE----AAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 722
            GR E   +   G R +I I+RI+N   RQVTF KRR GL KKA ELS+LCDAEV L+VFS+ G+L+++++ S++  IDRY       S T    E +    Q E     A+L+ +++      R M GE L  LN ++L+ +E  LE G+  +   K++ +  EI+ ++++ + L
Sbjct:    9 GRGEGEGRAATGKRERIAIRRIDNLAARQVTFSKRRRGLFKKAEELSILCDAEVGLVVFSATGKLFQFASTSMEQIIDRYN----SHSKTLQRAEPSQLDLQGEDSSTCARLKEELAETSLRLRQMRGEELHRLNVEQLQELEKSLESGLGSVLKTKSKKILDEIDGLERKRMQL 179          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MADS4_ORYSJ (MADS-box transcription factor 4 OS=Oryza sativa subsp. japonica GN=MADS4 PE=1 SV=3)

HSP 1 Score: 109.768 bits (273), Expect = 1.576e-23
Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATAD-TSNTGSIC-EANAQFYQQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSK 665
            MGRGKIEIKRIEN+TNRQVTF KRR G+LKKA E+ VLCDAEV +++FSS G+L +Y      S      +      +N+G I  +   +    E  +++ +  NMQ   R+M GE L+ L  KEL  +E  L  G + +R K
Sbjct:    1 MGRGKIEIKRIENSTNRQVTFSKRRAGILKKAREIGVLCDAEVGVVIFSSAGKLSDYCTPKTTSVFPPLSRILEKYQTNSGKILWDEKHKSLSAEIDRVKKENDNMQIELRHMKGEDLNSLQPKELIAIEEALNNGQANLRDK 143          
BLAST of CF832250 vs. ExPASy Swiss-Prot
Match: MAD55_ORYSJ (MADS-box transcription factor 55 OS=Oryza sativa subsp. japonica GN=MADS55 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 2.059e-23
Identity = 62/182 (34.07%), Postives = 97/182 (53.30%), Query Frame = 3
Query:  243 MGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVSLIVFSSRGRLYEYSNNSVKSTIDRYKKATADTSNTGSICEANAQFY----------------------QQEAAKLRIQISNMQNSNRNMLGESLSGLNFKELKNMETRLEKGISRIRSKKNELLFAEIEYMQKREVDL 722
            M R + EI+RIE+   RQVTF KRR GL KKA EL+VLCDA+V+L+VFSS G+L +++++++   ID+Y   + +   T      +  F+                        + + L  Q++      R M GE L GL+ +EL+ ME  LE G+ R+   K++    EI  +Q++ + L
Sbjct:    1 MARERREIRRIESAAARQVTFSKRRRGLFKKAEELAVLCDADVALVVFSSTGKLSQFASSNMNEIIDKYTTHSKNLGKTDKQPSIDLNFFLIILLRTYTNSYAYIHLLLQLEHSKCSSLNEQLAEASLQLRQMRGEELEGLSVEELQQMEKNLEAGLQRVLCTKDQQFMQEISELQRKGIQL 182          
The following BLAST results are available for this feature:
BLAST of CF832250 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 121
Match NameE-valueIdentityDescription
DEFA_ANTMA2.873e-2539.87Floral homeotic protein DEFICIENS OS=Antirrhinum m... [more]
MAD30_ORYSJ4.900e-2539.76MADS-box transcription factor 30 OS=Oryza sativa s... [more]
MAD26_ORYSJ4.900e-2538.99MADS-box transcription factor 26 OS=Oryza sativa s... [more]
MAD26_ORYSI4.900e-2538.99MADS-box transcription factor 26 OS=Oryza sativa s... [more]
PIST_ARATH8.358e-2539.74Floral homeotic protein PISTILLATA OS=Arabidopsis ... [more]
MAD22_ORYSJ2.432e-2440.12MADS-box transcription factor 22 OS=Oryza sativa s... [more]
MAD33_ORYSJ3.176e-2440.74MADS-box transcription factor 33 OS=Oryza sativa s... [more]
MAD47_ORYSJ1.207e-2337.71MADS-box transcription factor 47 OS=Oryza sativa s... [more]
MADS4_ORYSJ1.576e-2344.76MADS-box transcription factor 4 OS=Oryza sativa su... [more]
MAD55_ORYSJ2.059e-2334.07MADS-box transcription factor 55 OS=Oryza sativa s... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01I22_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01I22, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832250 ID=CF832250; Name=CF832250; organism=Citrus sinensis; type=EST; length=728bp
CCGTTTAACTTTCACTTTCTCTTCTGCTTCTCTCCCTGCTCTCTTCTCAT
TTTTTGTTAAGTAAGAAAGAAGAGAGAAATCCCAAATCCTGCTGAATCCT
GCTGAAACCTTTGTTTCTGCTGTCCTTTTGATAATCAAAATCATTCTACA
TTCCTTTGGTTAGATAGCAGGTGGTCAAGAAAAGAATGGCGTTTCCAAAT
GAATTAGCAGCAGGAAGAGAGGAATTATCACCAAAGAGAAAAATGGGGAG
AGGAAAGATCGAGATCAAGCGGATCGAAAACACAACAAATCGCCAAGTGA
CCTTCTGCAAGAGGCGCAATGGTTTGCTCAAGAAAGCTTACGAATTATCT
GTTCTTTGTGATGCTGAGGTTTCTCTTATCGTCTTCTCCAGCCGCGGCCG
CCTTTATGAGTATTCCAACAACAGTGTGAAATCAACAATTGACAGGTACA
AGAAGGCCACTGCAGATACCTCAAATACTGGGTCTATCTGTGAAGCAAAT
GCTCAGTTCTACCAGCAAGAAGCTGCCAAGCTGAGGATACAAATTAGCAA
TATGCAAAATTCAAACAGAAACATGTTGGGTGAATCACTAAGTGGGTTAA
ATTTCAAGGAACTCAAGAACATGGAGACTCGTTTAGAGAAAGGTATTAGC
AGAATCCGATCTAAAAAGAATGAGCTGCTGTTTGCAGAAATTGAGTACAT
GCAGAAGAGGGAAGTTGACTTGCACAAC
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