CF832255

Overview
NameCF832255
Unique NameCF832255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:95..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DDX46_DANRE (Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 2
Query:  251 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----SGILQQLDYGLVQCQ-ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDML 634
            G+   +L  +  + +EKP+ IQ + I     G D+I  A++G+GKT  F       IL Q   G  +   A+++ PTRELA QI K  +     L ++V    GGT + E    L+ G  ++V TPGR+ DML
Sbjct:  346 GISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 478          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDML 634
            SFD  G    +L  +   GF KP+ IQ +G      G D+I  A +G+GKT ++C  GI+      L+        LVLAPTRELA QI+K     G    ++     GG    +  R LQ GV +++ TPGR+ DML
Sbjct:  114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML 251          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 2
Query:  233 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDML 634
            ++FD  G  + ++  + A GF KP+ IQ +G      G DV+  A++G+GKT T+C   +  ++   +         LVLAPTRELA QI+  +   G    ++     GG       R L  GV V + TPGR+ DML
Sbjct:  125 ETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDML 263          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDML 634
            +FD  G  + +L+ + A GF+KP++IQ +G      G D++  A +G+GKT ++C  GI+      L+        LVLAPTRELA QI+K     G    ++     GG    +  R L  G  +V+ TPGR+ DML
Sbjct:  111 TFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDML 248          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP10_PHANO (ATP-dependent RNA helicase DBP10 OS=Phaeosphaeria nodorum GN=DBP10 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14
Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 2
Query:  239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGR 619
            F AMGL   LL+ I   GF+ P+ IQ++ +    +G DV+  A++G+GKTA F   ++++L      V  + ++++P+RELA Q  KV++  G    ++    VGG S+ E    +     +++ TPGR
Sbjct:   80 FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIERLKTHSAKVGARGVIMSPSRELALQTLKVVKEFGRGTDLRTILLVGGDSLEEQFNSMTTNPDIIIATPGR 208          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 46/144 (31.94%), Postives = 76/144 (52.78%), Query Frame = 2
Query:  239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF-------CSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649
            F + GL E L+  + A G+  P+ +Q + I        ++  A +G+GKTA+F       CS +  +         A+VLAPTREL  Q+E+  + LG  L  K    VGG  + +    ++ G+ ++VGTPGR+ D+L + ++
Sbjct:  139 FSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSHVRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIENGIELIVGTPGRLIDLLMKHNV 282          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: PRP28_BOTFB (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Botryotinia fuckeliana (strain B05.10) GN=prp28 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 2
Query:  254 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ--------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649
            L + LL  I+  G+++PSA+Q+  I    +  D+I  A +G+GKTA F   +L  +       +        A++LAPTRELAQQIE   +     LG    + VGG S+ E    L+ G  +++ TPGR+ D + R+ L
Sbjct:  387 LPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCIERRVL 526          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: PRP28_ASPNC (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 2
Query:  236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL---------QQLDYGLVQCQ-ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649
            S+D   L + L+  I   G+++P+ IQ+  I    +  D+I  A +G+GKTA F   +L          + ++       A+VLAPTRELAQQIE   +     LG  V + VGG S+ E    L+ G  +++ TPGR+ D + R+ L
Sbjct:  373 SWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADGPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCIERRIL 520          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: MAK5_DEBHA (ATP-dependent RNA helicase MAK5 OS=Debaryomyces hansenii GN=MAK5 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 2
Query:  239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV---GGTSVHEDQRILQAGVHVVVGTPGRVFDMLRR 640
            +D + L    L G+ A  +EKP+AIQ+R I    +G DVI +A +G+GKT  +   IL++    + +             ++ APTRELA Q+   +  +  +  +  H  V   GG S+ + +R+L  G  +VV TPGR  ++L++
Sbjct:  201 WDDLSLSSFTLNGLSALEYEKPTAIQKRTIPLAIEGKDVIGKAITGSGKTLAYGIPILERHLQKMAKANQSKKVINPPTGIIFAPTRELAHQVVDHLNRIAKFTPLSQHGIVSITGGLSIQKQERLLSHGPGIVVATPGRFLELLQK 347          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DDX56_MOUSE (Probable ATP-dependent RNA helicase DDX56 OS=Mus musculus GN=Ddx56 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14
Identity = 53/149 (35.57%), Postives = 83/149 (55.70%), Query Frame = 2
Query:  239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY----GLVQCQA---LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHED----QRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            F+ MGL   LL+ +   G+ +P+ IQ++ I    +G D++ +A++G+GKTA +   +LQ L +    G V  QA   LVL PT+ELA+Q + +++ L  Y    V   V   S  ED    + +L     VVVGTP RV   L++ +L+
Sbjct:    9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVR--VANVSAAEDSASQRAVLMEKPDVVVGTPSRVLSHLQQNTLK 155          
The following BLAST results are available for this feature:
BLAST of CF832255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
DDX46_DANRE7.278e-1435.34Probable ATP-dependent RNA helicase DDX46 OS=Danio... [more]
DBP2_KLULA7.278e-1437.68ATP-dependent RNA helicase DBP2 OS=Kluyveromyces l... [more]
DBP2_COCIM7.278e-1434.53ATP-dependent RNA helicase DBP2 OS=Coccidioides im... [more]
DBP2_CANGA7.278e-1436.23ATP-dependent RNA helicase DBP2 OS=Candida glabrat... [more]
DBP10_PHANO7.278e-1433.33ATP-dependent RNA helicase DBP10 OS=Phaeosphaeria ... [more]
RH41_ORYSJ9.505e-1431.94DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sa... [more]
PRP28_BOTFB9.505e-1435.00Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
PRP28_ASPNC9.505e-1434.46Pre-mRNA-splicing ATP-dependent RNA helicase prp28... [more]
MAK5_DEBHA9.505e-1431.97ATP-dependent RNA helicase MAK5 OS=Debaryomyces ha... [more]
DDX56_MOUSE9.505e-1435.57Probable ATP-dependent RNA helicase DDX56 OS=Mus m... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832255 ID=CF832255; Name=CF832255; organism=Citrus sinensis; type=EST; length=661bp
TTGGAAACCCTAACAACTATTTTCTCTCAAATCAATCCTCTCCTTCTCTT
TGAAGAAAAAAGAAAACCAACTCTTTCTCTCGGATTTTAATCACCATCAT
CAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTTGA
TGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGGGC
AAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAATG
GGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAGAA
GCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTG
ACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGC
TCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCT
GGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGA
GGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGG
ACAAGTGTTCACGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGT
TGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGCCGACAGTCTTTAC
GCCCTGATTAC
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