CF832255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DDX46_DANRE (Probable ATP-dependent RNA helicase DDX46 OS=Danio rerio GN=ddx46 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14 Identity = 47/133 (35.34%), Postives = 70/133 (52.63%), Query Frame = 2 Query: 251 GLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC----SGILQQLDYGLVQCQ-ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDML 634 G+ +L + + +EKP+ IQ + I G D+I A++G+GKT F IL Q G + A+++ PTRELA QI K + L ++V GGT + E L+ G ++V TPGR+ DML Sbjct: 346 GISMKVLNALKKHNYEKPTPIQAQAIPAIMSGRDLIGIAKTGSGKTIAFLLPMFRHILDQRPVGEAEGPLAVIMTPTRELALQITKECKKFSKSLALRVVCVYGGTGISEQIAELKRGAEIIVCTPGRMIDML 478
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP2_KLULA (ATP-dependent RNA helicase DBP2 OS=Kluyveromyces lactis GN=DBP2 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14 Identity = 52/138 (37.68%), Postives = 71/138 (51.45%), Query Frame = 2 Query: 236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDML 634 SFD G +L + GF KP+ IQ +G G D+I A +G+GKT ++C GI+ L+ LVLAPTRELA QI+K G ++ GG + R LQ GV +++ TPGR+ DML Sbjct: 114 SFDEAGFPSYVLDEVKQEGFAKPTGIQCQGWPMALSGRDMIGVAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGASSRIRNTCVYGGVPKSQQIRDLQRGVEILIATPGRLIDML 251
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP2_COCIM (ATP-dependent RNA helicase DBP2 OS=Coccidioides immitis GN=DBP2 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14 Identity = 48/139 (34.53%), Postives = 71/139 (51.08%), Query Frame = 2 Query: 233 DSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQA-----LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDML 634 ++FD G + ++ + A GF KP+ IQ +G G DV+ A++G+GKT T+C + ++ + LVLAPTRELA QI+ + G ++ GG R L GV V + TPGR+ DML Sbjct: 125 ETFDEAGFPQYVISEVKAQGFAKPTPIQSQGWPMALSGRDVVGIAETGSGKTLTYCLPAIVHINAQPLLGPGDGPIVLVLAPTRELAVQIQAEITKFGKSSRIRNTCVYGGVPRGPQIRDLSRGVEVCIATPGRLIDML 263
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP2_CANGA (ATP-dependent RNA helicase DBP2 OS=Candida glabrata GN=DBP2 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14 Identity = 50/138 (36.23%), Postives = 74/138 (53.62%), Query Frame = 2 Query: 236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFC-SGILQQLDYGLVQCQ----ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDML 634 +FD G + +L+ + A GF+KP++IQ +G G D++ A +G+GKT ++C GI+ L+ LVLAPTRELA QI+K G ++ GG + R L G +V+ TPGR+ DML Sbjct: 111 TFDEAGFPDYVLKEVKAEGFDKPTSIQCQGWPMALSGRDMVGIAATGSGKTLSYCLPGIVHINAQPLLSPGDGPIVLVLAPTRELAVQIQKECSKFGKSSRIRNTCVYGGVPRGQQIRELIRGAEIVIATPGRLIDML 248
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DBP10_PHANO (ATP-dependent RNA helicase DBP10 OS=Phaeosphaeria nodorum GN=DBP10 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 7.278e-14 Identity = 43/129 (33.33%), Postives = 73/129 (56.59%), Query Frame = 2 Query: 239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQL--DYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGR 619 F AMGL LL+ I GF+ P+ IQ++ + +G DV+ A++G+GKTA F ++++L V + ++++P+RELA Q KV++ G ++ VGG S+ E + +++ TPGR Sbjct: 80 FQAMGLNVALLKAIAQKGFKIPTPIQRKAVPLILQGDDVVGMARTGSGKTAAFVIPMIERLKTHSAKVGARGVIMSPSRELALQTLKVVKEFGRGTDLRTILLVGGDSLEEQFNSMTTNPDIIIATPGR 208
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: RH41_ORYSJ (DEAD-box ATP-dependent RNA helicase 41 OS=Oryza sativa subsp. japonica GN=Os02g0201900 PE=2 SV=2) HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14 Identity = 46/144 (31.94%), Postives = 76/144 (52.78%), Query Frame = 2 Query: 239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATF-------CSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649 F + GL E L+ + A G+ P+ +Q + I ++ A +G+GKTA+F CS + + A+VLAPTREL Q+E+ + LG L K VGG + + ++ G+ ++VGTPGR+ D+L + ++ Sbjct: 139 FSSSGLPEKLVLNLEAAGYVMPTPVQMQVIPSSICNRSLLVSADTGSGKTASFLVPIIAHCSHVRSERCTDKQGPLAIVLAPTRELCLQVEEQAKVLGKGLPFKTALVVGGDPLAQQIYRIENGIELIVGTPGRLIDLLMKHNV 282
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: PRP28_BOTFB (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Botryotinia fuckeliana (strain B05.10) GN=prp28 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14 Identity = 49/140 (35.00%), Postives = 75/140 (53.57%), Query Frame = 2 Query: 254 LQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ--------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649 L + LL I+ G+++PSA+Q+ I + D+I A +G+GKTA F +L + + A++LAPTRELAQQIE + LG + VGG S+ E L+ G +++ TPGR+ D + R+ L Sbjct: 387 LPKRLLDVIHQVGYDEPSAVQRAAIPIALQARDLIGVAVTGSGKTAAFLLPLLVYISELPPLNEFTKNDGPYAIILAPTRELAQQIEVEAKKFATPLGFTCVSIVGGHSLEEQSYNLRNGAEIIIATPGRLVDCIERRVL 526
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: PRP28_ASPNC (Pre-mRNA-splicing ATP-dependent RNA helicase prp28 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=prp28 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14 Identity = 51/148 (34.46%), Postives = 78/148 (52.70%), Query Frame = 2 Query: 236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGIL---------QQLDYGLVQCQ-ALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649 S+D L + L+ I G+++P+ IQ+ I + D+I A +G+GKTA F +L + ++ A+VLAPTRELAQQIE + LG V + VGG S+ E L+ G +++ TPGR+ D + R+ L Sbjct: 373 SWDESNLPKRLMELINRVGYKEPTPIQRAAIPIAMQNRDLIGVAVTGSGKTAAFLLPLLCYIAELPRIDEFEWRKADGPYAIVLAPTRELAQQIEIEAKKFTGPLGFNVVSIVGGHSLEEQAYSLRDGAEIIIATPGRLVDCIERRIL 520
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: MAK5_DEBHA (ATP-dependent RNA helicase MAK5 OS=Debaryomyces hansenii GN=MAK5 PE=3 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14 Identity = 47/147 (31.97%), Postives = 78/147 (53.06%), Query Frame = 2 Query: 239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQ----------ALVLAPTRELAQQIEKVMRALGDYLGVKVHACV---GGTSVHEDQRILQAGVHVVVGTPGRVFDMLRR 640 +D + L L G+ A +EKP+AIQ+R I +G DVI +A +G+GKT + IL++ + + ++ APTRELA Q+ + + + + H V GG S+ + +R+L G +VV TPGR ++L++ Sbjct: 201 WDDLSLSSFTLNGLSALEYEKPTAIQKRTIPLAIEGKDVIGKAITGSGKTLAYGIPILERHLQKMAKANQSKKVINPPTGIIFAPTRELAHQVVDHLNRIAKFTPLSQHGIVSITGGLSIQKQERLLSHGPGIVVATPGRFLELLQK 347
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: DDX56_MOUSE (Probable ATP-dependent RNA helicase DDX56 OS=Mus musculus GN=Ddx56 PE=2 SV=1) HSP 1 Score: 77.0258 bits (188), Expect = 9.505e-14 Identity = 53/149 (35.57%), Postives = 83/149 (55.70%), Query Frame = 2 Query: 239 FDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDY----GLVQCQA---LVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHED----QRILQAGVHVVVGTPGRVFDMLRRQSLR 652 F+ MGL LL+ + G+ +P+ IQ++ I +G D++ +A++G+GKTA + +LQ L + G V QA LVL PT+ELA+Q + +++ L Y V V S ED + +L VVVGTP RV L++ +L+ Sbjct: 9 FEHMGLDPRLLQAVTDLGWSRPTLIQEKAIPLALEGKDLLARARTGSGKTAAYAIPMLQSLLHKKATGPVMEQAVRGLVLVPTKELARQAQAMIQQLAAYCARDVR--VANVSAAEDSASQRAVLMEKPDVVVGTPSRVLSHLQQNTLK 155 The following BLAST results are available for this feature:
BLAST of CF832255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832255 ID=CF832255; Name=CF832255; organism=Citrus sinensis; type=EST; length=661bpback to top |