CF832255

Overview
NameCF832255
Unique NameCF832255
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length661
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3195 contig Csv1_Contig3195:95..754. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_ASPCL (ATP-dependent RNA helicase fal1 OS=Aspergillus clavatus GN=fal1 PE=3 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.029e-44
Identity = 93/154 (60.39%), Postives = 114/154 (74.03%), Query Frame = 2
Query:  194 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR
Sbjct:   11 DRLEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTAVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLR 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_ASPTN (ATP-dependent RNA helicase fal1 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=fal1 PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 3.957e-44
Identity = 93/154 (60.39%), Postives = 114/154 (74.03%), Query Frame = 2
Query:  194 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFAISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLR 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_DICDI (Eukaryotic initiation factor 4A OS=Dictyostelium discoideum GN=tifA PE=3 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 5.167e-44
Identity = 92/160 (57.50%), Postives = 118/160 (73.75%), Query Frame = 2
Query:  188 STDGQDF-----FTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649
            S DG  F     FTS + EV  +F++MGL+E LLRGI+ YGFEKPSAIQQR I+P  KG D I QAQSGTGKTATF  G LQ ++  +   Q L+L+PTRELAQQI+KV  AL +++ ++VHACVGG ++ +D + L+ GVH+V GTPGRV DM+ R+SL
Sbjct:   11 SNDGSSFKLNETFTSSEVEVKPTFESMGLREELLRGIFNYGFEKPSAIQQRAILPIIKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEFMNIQVHACVGGKNLSDDVKKLETGVHIVSGTPGRVLDMITRKSL 170          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_ASPNC (ATP-dependent RNA helicase fal1 OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=fal1 PE=3 SV=2)

HSP 1 Score: 177.563 bits (449), Expect = 5.167e-44
Identity = 93/154 (60.39%), Postives = 114/154 (74.03%), Query Frame = 2
Query:  194 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR
Sbjct:   11 DRMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRESQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLR 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_NEOFI (ATP-dependent RNA helicase fal1 OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 / FGSC A1164 / NRRL 181) GN=fal1 PE=3 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 6.749e-44
Identity = 93/154 (60.39%), Postives = 114/154 (74.03%), Query Frame = 2
Query:  194 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF   ILQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR
Sbjct:   11 DRLEFSTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISILQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLR 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_ASHGO (ATP-dependent RNA helicase eIF4A OS=Ashbya gossypii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.151e-43
Identity = 86/162 (53.09%), Postives = 115/162 (70.99%), Query Frame = 2
Query:  176 NELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDY 661
            + + + +  +  T+YD++   FD + L+E LLRGIY YGF  PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ++D  +   QAL+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGT   ED   L+AG  +VVGTPGRVFDM+ R++ + D+
Sbjct:    3 DSITNPENSEIQTNYDKIVHKFDELKLKEVLLRGIYGYGFVDPSAIQQRAILPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDESIKAPQALILAPTRELALQIQKVVMALALHMDVKVHACIGGTDPREDAEALRAGAQIVVGTPGRVFDMIERRNFKTDH 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_PICGU (ATP-dependent RNA helicase FAL1 OS=Pichia guilliermondii GN=FAL1 PE=3 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.504e-43
Identity = 84/144 (58.33%), Postives = 107/144 (74.31%), Query Frame = 2
Query:  224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRP 655
            ++Y +F++M L+  LL+GIY YGFE PSAIQ R I+   +G D I QAQSGTGKTATF  GIL  +D     CQALVL+PTRELAQQIE V+  LGDY+ V+ HAC+GGT V ED + LQ G H++ GTPGRV DM++R+++ P
Sbjct:   21 KIYPTFESMNLKPELLKGIYNYGFEAPSAIQSRAIMQIIRGRDTIAQAQSGTGKTATFSIGILSSIDTKSKDCQALVLSPTRELAQQIENVIEHLGDYMNVRSHACIGGTQVGEDVKKLQQGQHIISGTPGRVLDMIKRRNIMP 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_EMENI (ATP-dependent RNA helicase fal1 OS=Emericella nidulans GN=fal1 PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.964e-43
Identity = 92/154 (59.74%), Postives = 113/154 (73.38%), Query Frame = 2
Query:  194 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652
            D  +F TS +  V  +F+ M L+E+LLRGIYAYG+E PSA+Q R IV  CKG D I QAQSGTGKTATF    LQ +D  + + QALVL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGT++ ED R L  G HVV GTPGRV DM+RR+ LR
Sbjct:   11 DKMEFNTSKEVTVAPTFEDMHLKESLLRGIYAYGYESPSAVQSRAIVQICKGRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYMNVQCHACIGGTNIGEDIRKLDYGQHVVSGTPGRVADMIRRRHLR 164          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_PICGU (ATP-dependent RNA helicase eIF4A OS=Pichia guilliermondii GN=TIF1 PE=3 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 9.745e-43
Identity = 87/160 (54.37%), Postives = 111/160 (69.38%), Query Frame = 2
Query:  179 ELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658
            E    D     T+YD V  SFD + L+ N++RGI+ YG+E PSAIQQR I+P  +G DV+ QAQSGTGKTATF    LQ++D  L   QAL+LAPTRELA QI+ V+  +G YL V VHA +GGTS+ +D    ++GV +VVGTPGRVFDM+ R+  R D
Sbjct:    4 EFNEIDANTIETNYDNVVYSFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENLKATQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFRTD 163          
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_KLULA (ATP-dependent RNA helicase eIF4A OS=Kluyveromyces lactis GN=TIF1 PE=3 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 2.835e-42
Identity = 85/155 (54.84%), Postives = 110/155 (70.97%), Query Frame = 2
Query:  194 DGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658
            D     ++YD+V  SFD + L+E LLRGI+ YGF +PSAIQQR I+P  +G DV+ QAQSGTGKT TF    LQ +D  +   Q L+LAPTRELA QI+KV+ AL  ++ VKVHAC+GGTS+ ED   L+ G  ++VGTPGRVFDM+ R+  + D
Sbjct:    9 DENQIQSTYDKVVYSFDDLKLKEELLRGIFGYGFVEPSAIQQRAILPIIEGKDVLAQAQSGTGKTGTFSIAALQNIDEKIKAPQGLILAPTRELALQIQKVVMALAIHMDVKVHACIGGTSLQEDSEALRGGAQIIVGTPGRVFDMIDRRIFKTD 163          
The following BLAST results are available for this feature:
BLAST of CF832255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
FAL1_ASPCL3.029e-4460.39ATP-dependent RNA helicase fal1 OS=Aspergillus cla... [more]
FAL1_ASPTN3.957e-4460.39ATP-dependent RNA helicase fal1 OS=Aspergillus ter... [more]
IF4A_DICDI5.167e-4457.50Eukaryotic initiation factor 4A OS=Dictyostelium d... [more]
FAL1_ASPNC5.167e-4460.39ATP-dependent RNA helicase fal1 OS=Aspergillus nig... [more]
FAL1_NEOFI6.749e-4460.39ATP-dependent RNA helicase fal1 OS=Neosartorya fis... [more]
IF4A_ASHGO1.151e-4353.09ATP-dependent RNA helicase eIF4A OS=Ashbya gossypi... [more]
FAL1_PICGU1.504e-4358.33ATP-dependent RNA helicase FAL1 OS=Pichia guillier... [more]
FAL1_EMENI1.964e-4359.74ATP-dependent RNA helicase fal1 OS=Emericella nidu... [more]
IF4A_PICGU9.745e-4354.38ATP-dependent RNA helicase eIF4A OS=Pichia guillie... [more]
IF4A_KLULA2.835e-4254.84ATP-dependent RNA helicase eIF4A OS=Kluyveromyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832255 ID=CF832255; Name=CF832255; organism=Citrus sinensis; type=EST; length=661bp
TTGGAAACCCTAACAACTATTTTCTCTCAAATCAATCCTCTCCTTCTCTT
TGAAGAAAAAAGAAAACCAACTCTTTCTCTCGGATTTTAATCACCATCAT
CAAAGCTTTGCAGATATGGCTGGTTTGGCACCCGAAGGATCTCAATTTGA
TGCTCGTCAGTATGACACCAAGATGAATGAACTGCTCTCTACTGATGGGC
AAGATTTCTTCACTTCTTATGATGAAGTTTATGACAGTTTTGATGCAATG
GGACTGCAGGAAAACCTTTTGAGGGGAATCTATGCCTATGGGTTTGAGAA
GCCCTCTGCTATTCAGCAAAGGGGAATTGTTCCCTTCTGCAAGGGACTTG
ACGTCATTCAGCAGGCTCAGTCTGGAACTGGGAAAACAGCAACTTTCTGC
TCTGGAATTTTGCAGCAACTTGATTATGGTCTTGTCCAATGTCAGGCCCT
GGTATTGGCACCCACTAGGGAACTAGCTCAACAGATTGAGAAAGTAATGA
GGGCACTTGGTGATTATCTTGGTGTTAAGGTTCATGCTTGTGTCGGTGGG
ACAAGTGTTCACGAGGATCAGCGCATTCTTCAAGCTGGTGTTCATGTTGT
TGTTGGCACTCCTGGACGTGTGTTTGACATGCTGCGCCGACAGTCTTTAC
GCCCTGATTAC
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