CF832255
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_CANGA (ATP-dependent RNA helicase eIF4A OS=Candida glabrata GN=TIF1 PE=3 SV=1) HSP 1 Score: 167.933 bits (424), Expect = 4.094e-41 Identity = 86/161 (53.42%), Postives = 112/161 (69.57%), Query Frame = 2 Query: 176 NELLSTDGQDFFTSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658 +++ D T+YD+V FD M L E LLRG++ YGF KPSAIQQR I+P +G DV+ QAQSGTGKT TF LQ++D + QAL+LAPTRELA QI+KV+ ALG ++ +KVHAC+GGTS ED L+ +VVGTPGRVFD ++R+ + D Sbjct: 4 DQMTQLDESQIETNYDKVVYEFDDMNLNEKLLRGVFGYGFNKPSAIQQRAIMPIIEGNDVLAQAQSGTGKTGTFSIAALQRIDPAIKAPQALMLAPTRELALQIQKVVMALGFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRKFKVD 163
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_DEBHA (ATP-dependent RNA helicase eIF4A OS=Debaryomyces hansenii GN=TIF1 PE=3 SV=1) HSP 1 Score: 167.548 bits (423), Expect = 5.347e-41 Identity = 82/149 (55.03%), Postives = 108/149 (72.48%), Query Frame = 2 Query: 212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658 T+YD V +FD + L+ N++RGI+ YG+E PSAIQQR I+P +G DV+ QAQSGTGKTATF LQ++D QAL+LAPTRELA QI+ V+ +G YL V VHA +GGTS+ +D ++GV +VVGTPGRVFDM+ R+ + D Sbjct: 16 TNYDNVVYTFDDLNLKPNIVRGIFGYGYESPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVITHIGLYLNVTVHASIGGTSMKDDIEAFKSGVQIVVGTPGRVFDMIERRFFKTD 164
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_YEAST (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae GN=TIF1 PE=1 SV=3) HSP 1 Score: 167.162 bits (422), Expect = 6.984e-41 Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 2 Query: 212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658 T+YD+V FD M L ENLLRG++ YGFE+PSAIQQR I+P +G DV+ QAQSGTGKT TF LQ++D + QAL+LAPTRELA QI+KV+ AL ++ +KVHAC+GGTS ED L+ +VVGTPGRVFD ++R+ R D Sbjct: 15 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTD 162
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_YEAS7 (ATP-dependent RNA helicase eIF4A OS=Saccharomyces cerevisiae (strain YJM789) GN=TIF1 PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 6.984e-41 Identity = 86/149 (57.72%), Postives = 109/149 (73.15%), Query Frame = 2 Query: 212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658 T+YD+V FD M L ENLLRG++ YGFE+PSAIQQR I+P +G DV+ QAQSGTGKT TF LQ++D + QAL+LAPTRELA QI+KV+ AL ++ +KVHAC+GGTS ED L+ +VVGTPGRVFD ++R+ R D Sbjct: 15 TNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIGGTSFVEDAEGLR-DAQIVVGTPGRVFDNIQRRRFRTD 162
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_LODEL (ATP-dependent RNA helicase eIF4A OS=Lodderomyces elongisporus GN=TIF1 PE=3 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 6.984e-41 Identity = 82/149 (55.03%), Postives = 108/149 (72.48%), Query Frame = 2 Query: 212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658 ++YD V FD + L+ N++RGI+ YG+E PSAIQQR I+P +G DV+ QAQSGTGKTATF LQ++D QAL+LAPTRELA QI+ V+ ++G YL V VHA +GGTS+ +D ++GV +VVGTPGRVFDM+ R+ R D Sbjct: 16 SNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMSDDIEAFKSGVQIVVGTPGRVFDMIERRYFRTD 164
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A_PICST (ATP-dependent RNA helicase eIF4A OS=Pichia stipitis GN=TIF1 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.121e-41 Identity = 82/149 (55.03%), Postives = 108/149 (72.48%), Query Frame = 2 Query: 212 TSYDEVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLRPD 658 T+YD V FD + L+ N++RGI+ YG+E PSAIQQR I+P +G DV+ QAQSGTGKTATF LQ++D QAL+LAPTRELA QI+ V+ ++G YL V VHA +GGTS+ +D ++GV VVVGTPGRVFDM+ R+ + + Sbjct: 16 TNYDNVVYKFDDLNLKPNIVRGIFGYGYETPSAIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVITSIGLYLNVTVHASIGGTSMQDDIEAFRSGVQVVVGTPGRVFDMIERRYFKTE 164
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_DEBHA (ATP-dependent RNA helicase FAL1 OS=Debaryomyces hansenii GN=FAL1 PE=3 SV=1) HSP 1 Score: 166.777 bits (421), Expect = 9.121e-41 Identity = 81/142 (57.04%), Postives = 106/142 (74.65%), Query Frame = 2 Query: 224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSL 649 +V+ +F++M L+ +LL+GIY YGFE PSAIQ R I+ G D I QAQSGTGKTATF G+L+ +D CQAL+L+PTRELAQQI+ V++ LGDY+ V HAC+GGT V ED + LQ G +V GTPGRV DM++R++L Sbjct: 23 KVHATFESMNLKTDLLKGIYGYGFEAPSAIQSRAIMQIISGKDTIAQAQSGTGKTATFSIGMLEVIDTKSKDCQALILSPTRELAQQIQSVVKHLGDYMNVHTHACIGGTHVGEDIKKLQQGQQIVSGTPGRVVDMIKRRNL 164
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: RH2_ARATH (DEAD-box ATP-dependent RNA helicase 2 OS=Arabidopsis thaliana GN=RH2 PE=2 SV=2) HSP 1 Score: 166.007 bits (419), Expect = 1.556e-40 Identity = 81/143 (56.64%), Postives = 107/143 (74.83%), Query Frame = 2 Query: 224 EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652 E SF+ MG++E++LRG+Y YGFEKPSAIQQR ++P +G DVI QAQSGTGKT+ + Q +D + QAL+L+PTRELA Q EK ++A+G + ++ HAC+GG SV ED R L+ GVHVV GTPGRV DM++R+SLR Sbjct: 32 EPITSFNDMGIKEDVLRGVYEYGFEKPSAIQQRAVMPILQGRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLHANIQAHACIGGNSVGEDIRKLEHGVHVVSGTPGRVCDMIKRRSLR 174
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: IF4A3_NICPL (Eukaryotic initiation factor 4A-3 OS=Nicotiana plumbaginifolia PE=2 SV=1) HSP 1 Score: 166.007 bits (419), Expect = 1.556e-40 Identity = 82/139 (58.99%), Postives = 105/139 (75.54%), Query Frame = 2 Query: 236 SFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652 SF MG++++LLRG+Y YGFEKPSAIQQR ++P G DVI QAQSGTGKT+ + Q +D + QAL+L+PTRELA Q EKV+ A+GDY+ V+ HAC+GG SV ED R L+ GV VV GTPGRV DM++R++LR Sbjct: 19 SFAEMGIKDDLLRGVYQYGFEKPSAIQQRAVLPIISGRDVIAQAQSGTGKTSMIALTVCQIVDTKSSEVQALILSPTRELAAQTEKVILAIGDYINVQAHACIGGKSVGEDIRKLEHGVQVVSGTPGRVCDMIKRRTLR 157
BLAST of CF832255 vs. ExPASy Swiss-Prot
Match: FAL1_YARLI (ATP-dependent RNA helicase FAL1 OS=Yarrowia lipolytica GN=FAL1 PE=3 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 4.527e-40 Identity = 86/154 (55.84%), Postives = 111/154 (72.08%), Query Frame = 2 Query: 194 DGQDFFTSYD-EVYDSFDAMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLVQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVHEDQRILQAGVHVVVGTPGRVFDMLRRQSLR 652 D +F TS D +V +F++M L+++LLRGIYAYGFE PSAIQ R I KG D I QAQSGTGKTATF +L+ +D + QA+VL+PTRELA QI+ V+ ALGDY+ V+ HAC+GGTS+ D + L+AG VV GTPGR DM+++ LR Sbjct: 10 DELEFKTSKDVDVTPTFESMDLKDDLLRGIYAYGFEAPSAIQSRAITQIIKGRDTIAQAQSGTGKTATFSISMLEVIDTKHRETQAMVLSPTRELATQIQSVILALGDYMNVQCHACIGGTSLSVDMKKLEAGQQVVSGTPGRCLDMIKKGCLR 163 The following BLAST results are available for this feature:
BLAST of CF832255 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832255 ID=CF832255; Name=CF832255; organism=Citrus sinensis; type=EST; length=661bpback to top |