CF832264

Overview
NameCF832264
Unique NameCF832264
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length598
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig7580 contig Csv1_Contig7580:571..1169. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832264 vs. ExPASy Swiss-Prot
Match: 1433G_SHEEP (14-3-3 protein gamma (Fragments) OS=Ovis aries GN=YWHAG PE=1 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 60/95 (63.16%), Postives = 68/95 (71.58%), Query Frame = 2
Query:    5 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSEFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAG 289
            ES+  AY  A +I+   + PTHPIRLGLALN+S FYYEI             AFD+AI+ELDTL E+SYKDSTLIMQLLRDNLTLWTSD  DD G
Sbjct:   75 ESSEKAYSEAHEISKEHMQPTHPIRLGLALNYSVFYYEIT------------AFDDAIAELDTLNEDSYKDSTLIMQLLRDNLTLWTSDQQDDDG 157          
BLAST of CF832264 vs. ExPASy Swiss-Prot
Match: 14331_SCHMA (14-3-3 protein homolog 1 OS=Schistosoma mansoni PE=2 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 9.926e-25
Identity = 61/97 (62.89%), Postives = 69/97 (71.13%), Query Frame = 2
Query:    5 ESTLLAYKSAQDIALAELAPTHPIRLGLALNFSEFYYEILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDITDDAGDE 295
            + +L AY  A   A   L  THPIRLGLALNFS F+YEI N   +AC LAK AFD AI+ELD L ++SYKDSTLIMQLLRDNLTLW SD T +   E
Sbjct:  154 QKSLDAYTKATTAA-ENLPTTHPIRLGLALNFSVFFYEIQNDAAKACELAKSAFDSAIAELDQLQDDSYKDSTLIMQLLRDNLTLWASDQTAEGDVE 249          
BLAST of CF832264 vs. ExPASy Swiss-Prot
Match: 14338_ORYSJ (Putative 14-3-3-like protein GF14-H OS=Oryza sativa subsp. japonica GN=GF14H PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 6.673e-13
Identity = 33/54 (61.11%), Postives = 45/54 (83.33%), Query Frame = 2
Query:  116 EILNSPDRACNLAKQAFDEAISELDTLGEESYKDSTLIMQLLRDNLTLWTSDIT 277
            EI+NSP+RA  +AKQA DEA +E+++ G E YKDS L+MQLL++NL LWTS++T
Sbjct:  163 EIMNSPERASQVAKQALDEATAEINSAGVEGYKDSMLMMQLLKENLALWTSELT 216          
The following BLAST results are available for this feature:
BLAST of CF832264 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 143
Match NameE-valueIdentityDescription
1433G_SHEEP9.926e-2563.1614-3-3 protein gamma (Fragments) OS=Ovis aries GN=... [more]
14331_SCHMA9.926e-2562.8914-3-3 protein homolog 1 OS=Schistosoma mansoni PE... [more]
14338_ORYSJ6.673e-1361.11Putative 14-3-3-like protein GF14-H OS=Oryza sativ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01J10_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832264 ID=CF832264; Name=CF832264; organism=Citrus sinensis; type=EST; length=598bp
TGCGGAGAGCACTTTGTTGGCCTACAAGTCAGCTCAGGATATTGCTTTAG
CTGAATTGGCCCCTACTCACCCCATAAGGCTGGGACTTGCACTCAACTTC
TCTGAGTTCTACTATGAAATCCTTAACTCACCAGATCGTGCATGCAATCT
TGCGAAGCAGGCTTTTGATGAGGCCATTTCTGAGCTTGATACCTTGGGTG
AAGAATCATACAAGGACAGTACATTGATTATGCAGCTTCTCCGAGATAAT
CTGACACTTTGGACTTCTGATATCACTGATGATGCTGGAGATGAGATTAA
GGAAGCAGCATCAAAACGTGAATCAGGGGAGACGCAGCAGTGATGAATAA
TGAGTTCAGTTCATAGGATATGTATCTGTATTTTTATCTTGTGGCTTTTA
TTTTACATGGATGCCATGTGGGTTGTTTTAGCAGGATATTCTCATGAACT
GATAATCTTGAGTGTTGGCTGCACTTAGGGTTCATGTGTTCCAACAGATT
GTAAACTAGATTTAATTATTGATGAGAAGTATTTGGTTTGGGTTTCATAT
GTAGTGTTTTCAGTGCTATGCTAAACTTTAGAATTGAAATTAAAAAAA
back to top