CF832280

Overview
NameCF832280
Unique NameCF832280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832280_ssr237 microsatellite CF832280_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:510..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER38_ARATH (Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=2 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 1.150e-54
Identity = 105/177 (59.32%), Postives = 126/177 (71.19%), Query Frame = -1
Query:  258 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTP-GADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNI 785
            AN NLPGP  TL +LK  F+NVGL+   DLVALSG HTFG++QCQF   RLY+F  TG PDPTLD ++L  LRK CP+ GN  VL +FD+ TP +FDNKY+ NL+  KGL+QSDQELF +P  ADT  +V  +   Q  FF  FV ++IRM +L PLTG QGEIRLNCR VN  S I
Sbjct:  156 ANDNLPGPSSTLKQLKDRFKNVGLDRSSDLVALSGGHTFGKSQCQFIMDRLYNFGETGLPDPTLDKSYLATLRKQCPRNGNQSVLVDFDLRTPTLFDNKYYVNLKENKGLIQSDQELFSSPDAADTLPLVRAYADGQGTFFDAFVKAIIRMSSLSPLTGKQGEIRLNCRVVNSKSKI 332          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER1B_ARMRU (Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE=3 SV=1)

HSP 1 Score: 213.001 bits (541), Expect = 1.502e-54
Identity = 106/175 (60.57%), Postives = 126/175 (72.00%), Query Frame = -1
Query:  264 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 785
            AN NLP PF TL +LK +F  VGL+   DLVALSG HTFG+ QC+F   RLY+F+NTG PDPTL+ T+LQ LR+ CP  GN  VL +FD+ TP VFDNKY+ NL+ +KGL+QSDQELF +P A DT  +V  F      FF  FV +M RMGN+ PLTG QGEIRLNCR VN NS
Sbjct:  162 ANANLPAPFFTLPQLKDAFAKVGLDRPSDLVALSGGHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRQQCPLNGNQSVLVDFDLRTPTVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRSFADGTQKFFNAFVEAMNRMGNITPLTGTQGEIRLNCRVVNSNS 336          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER33_ARATH (Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=1 SV=1)

HSP 1 Score: 212.616 bits (540), Expect = 1.961e-54
Identity = 105/175 (60.00%), Postives = 129/175 (73.71%), Query Frame = -1
Query:  264 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 785
            AN NLP PF TL +LK++F+NVGL+   DLVALSGAHTFG+ QC+F   RLY+F+NTG PDPTL+ T+LQ LR  CP+ GN  VL +FD+ TP VFDNKY+ NL+ +KGL+QSDQELF +P A DT  +V  +      FF  FV +M RMGN+ P TG QG+IRLNCR VN NS
Sbjct:  165 ANANLPAPFFTLPQLKANFKNVGLDRPSDLVALSGAHTFGKNQCRFIMDRLYNFSNTGLPDPTLNTTYLQTLRGQCPRNGNQSVLVDFDLRTPLVFDNKYYVNLKEQKGLIQSDQELFSSPNATDTIPLVRAYADGTQTFFNAFVEAMNRMGNITPTTGTQGQIRLNCRVVNSNS 339          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER32_ARATH (Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=1 SV=3)

HSP 1 Score: 212.231 bits (539), Expect = 2.562e-54
Identity = 105/175 (60.00%), Postives = 128/175 (73.14%), Query Frame = -1
Query:  264 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGA-DTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 785
            AN NLP PF TL +LK+SF+NVGL+   DLVALSG HTFG+ QCQF   RLY+F+NTG PDPTL+ T+LQ LR  CP+ GN  VL +FD+ TP VFDNKY+ NL+  KGL+Q+DQELF +P A DT  +V ++      FF  FV +M RMGN+ PLTG QG+IR NCR VN NS
Sbjct:  163 ANTNLPAPFFTLPQLKASFQNVGLDRPSDLVALSGGHTFGKNQCQFIMDRLYNFSNTGLPDPTLNTTYLQTLRGQCPRNGNQTVLVDFDLRTPTVFDNKYYVNLKELKGLIQTDQELFSSPNATDTIPLVREYADGTQKFFNAFVEAMNRMGNITPLTGTQGQIRQNCRVVNSNS 337          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER53_ARATH (Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=1 SV=1)

HSP 1 Score: 206.068 bits (523), Expect = 1.836e-52
Identity = 97/173 (56.07%), Postives = 124/173 (71.68%), Query Frame = -1
Query:  267 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 785
            AN ++P P ++L  +   F  VGLN   DLVALSGAHTFGRA+C  F  RL++F+ TG PDPTL++T L  L++LCPQ G+   + N D++TPD FDN YF+NL+   GLLQSDQELF T G+ T AIV  F  NQ  FF+ F  SMI MGN+ PLTG+ GEIRL+C++VNG+
Sbjct:  164 ANSSIPSPIESLSNITFKFSAVGLNTN-DLVALSGAHTFGRARCGVFNNRLFNFSGTGNPDPTLNSTLLSTLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNDGLLQSDQELFSTTGSSTIAIVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVNGS 335          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PERA2_ARMRU (Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1 SV=1)

HSP 1 Score: 202.216 bits (513), Expect = 2.651e-51
Identity = 96/173 (55.49%), Postives = 123/173 (71.10%), Query Frame = -1
Query:  267 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 785
            AN  +P PF+ L  + S F  VGLN   DLVALSGAHTFGRA+C  F  RL++F+ T  PDPTL++T L  L++LCPQ G+   + N D++TPD FDN YF+NL+   GLLQSDQELF T G+ T A+V  F  NQ  FF+ F  SMI MGN+ PLTG+ GEIRL+C++V+G+
Sbjct:  134 ANSAIPSPFEGLSNITSKFSAVGLNTN-DLVALSGAHTFGRARCGVFNNRLFNFSGTNGPDPTLNSTLLSSLQQLCPQNGSASTITNLDLSTPDAFDNNYFANLQSNNGLLQSDQELFSTLGSATIAVVTSFASNQTLFFQAFAQSMINMGNISPLTGSNGEIRLDCKKVDGS 305          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER54_ARATH (Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=2 SV=1)

HSP 1 Score: 201.83 bits (512), Expect = 3.462e-51
Identity = 100/187 (53.48%), Postives = 128/187 (68.45%), Query Frame = -1
Query:  225 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDL 785
            AN +LP PF+ L+ + S F  VGL    D+V+LSGAHTFGR QC  F  RL++FN TG PDPTL++T L  L++LCPQ G+   + N D++TPD FDN YF+NL+   GLLQSDQELF   G+ T  IV  F  NQ  FF+ FV SMI+MGN+ PLTG+ GEIR +C+ VNG S     S++  GD+
Sbjct:  165 ANSSLPSPFEGLNNITSKFVAVGLKTT-DVVSLSGAHTFGRGQCVTFNNRLFNFNGTGNPDPTLNSTLLSSLQQLCPQNGSNTGITNLDLSTPDAFDNNYFTNLQSNNGLLQSDQELFSNTGSATVPIVNSFASNQTLFFEAFVQSMIKMGNISPLTGSSGEIRQDCKVVNGQS-----SATEAGDI 345          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PERX_TOBAC (Lignin-forming anionic peroxidase OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 6.529e-50
Identity = 96/172 (55.81%), Postives = 126/172 (73.26%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGG-VLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN ++P PF+TL  +   F N G+ D  DLVALSGAHTFGRA+C  F  RL++FN +G PD T+DATFLQ L+ +CPQGGN G    N D++TP+ FDN YF+NL+  +GLLQ+DQELF T G+ T AIV  +  +Q  FF +FV+SMI++GN+ PLTG  G+IR +C+RVN
Sbjct:  154 ANSDIPSPFETLAVMIPQFTNKGM-DLTDLVALSGAHTFGRARCGTFEQRLFNFNGSGNPDLTVDATFLQTLQGICPQGGNNGNTFTNLDISTPNDFDNDYFTNLQSNQGLLQTDQELFSTSGSATIAIVNRYAGSQTQFFDDFVSSMIKLGNISPLTGTNGQIRTDCKRVN 324          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER58_ARATH (Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 1.010e-42
Identity = 90/166 (54.22%), Postives = 116/166 (69.88%), Query Frame = -1
Query:  273 GPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFN-NTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 767
            GP D+L+ L S F    L D  DLVALSGAHTFGR QC     RL++F+ N+G+ DP+++  FLQ LR+ CPQGG+    AN D T+PD FDN YF NL+  +G+++SDQ LF + GA T ++V  F  NQN FF NF  SMI+MGN++ LTG +GEIR +CRRVN
Sbjct:  166 GP-DSLEILTSKFSVHNL-DTTDLVALSGAHTFGRVQCGVINNRLHNFSGNSGQSDPSIEPEFLQTLRRQCPQGGDLTARANLDPTSPDSFDNDYFKNLQNNRGVIESDQILFSSTGAPTVSLVNRFAENQNEFFTNFARSMIKMGNVRILTGREGEIRRDCRRVN 329          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER2_CUCSA (Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.248e-41
Identity = 90/171 (52.63%), Postives = 110/171 (64.33%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            A   LP PF+ + +LK  F  V L D  DLVALSGAHTFG+++CQFF  RL    N   PD TL+  + QQLR+ C  G +     N D TTP+ FD  Y++NL+   G L SDQ L  TPG DT  IV  F  +QN FF++F  SMI MGN++PLTGNQGEIR NCRR+N
Sbjct:  129 AIDGLPSPFENVTQLKRKFDRVDL-DSTDLVALSGAHTFGKSRCQFFDRRL----NVSNPDSTLNPRYAQQLRQACSSGRD--TFVNLDPTTPNKFDKNYYTNLQSNTGPLTSDQVLHSTPGEDTVKIVNLFAASQNQFFESFGQSMINMGNIQPLTGNQGEIRSNCRRLN 292          
The following BLAST results are available for this feature:
BLAST of CF832280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER38_ARATH1.150e-5459.32Peroxidase 38 OS=Arabidopsis thaliana GN=PER38 PE=... [more]
PER1B_ARMRU1.502e-5460.57Peroxidase C1B OS=Armoracia rusticana GN=PRXC1B PE... [more]
PER33_ARATH1.961e-5460.00Peroxidase 33 OS=Arabidopsis thaliana GN=PER33 PE=... [more]
PER32_ARATH2.562e-5460.00Peroxidase 32 OS=Arabidopsis thaliana GN=PER32 PE=... [more]
PER53_ARATH1.836e-5256.07Peroxidase 53 OS=Arabidopsis thaliana GN=PER53 PE=... [more]
PERA2_ARMRU2.651e-5155.49Peroxidase A2 OS=Armoracia rusticana GN=HRPA2 PE=1... [more]
PER54_ARATH3.462e-5153.48Peroxidase 54 OS=Arabidopsis thaliana GN=PER54 PE=... [more]
PERX_TOBAC6.529e-5055.81Lignin-forming anionic peroxidase OS=Nicotiana tab... [more]
PER58_ARATH1.010e-4254.22Peroxidase 58 OS=Arabidopsis thaliana GN=PER58 PE=... [more]
PER2_CUCSA3.248e-4152.63Peroxidase 2 (Fragment) OS=Cucumis sativus PE=2 SV... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832280 ID=CF832280; Name=CF832280; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTGAAACACAAACAAAAGTTTAATTAATCTCCTTT
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCCAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGC
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