CF832280

Overview
NameCF832280
Unique NameCF832280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832280_ssr237 microsatellite CF832280_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:510..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PERX_SOLTU (Suberization-associated anionic peroxidase OS=Solanum tuberosum PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 61/170 (35.88%), Postives = 82/170 (48.24%), Query Frame = -1
Query:  264 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 773
            LP PFD L      F +     + ++VAL+GAHT G A+C            +G  +P        QL+  C        L   D TTP +FD  Y+ NL   +G++ SDQ L  T  A TA  V D+  + + F  +F  +MI+MG+L P  G Q EIR  C RVN  S
Sbjct:  207 LPAPFDNLTVQIQKFNDKNFTLR-EMVALAGAHTVGFARCS-------TVCTSGNVNPAA------QLQCNCSATLTDSDLQQLD-TTPTMFDKVYYDNLNNNQGIMFSDQVL--TGDATTAGFVTDYSNDVSVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVNPTS 359          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER18_ARATH (Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.168e-16
Identity = 58/164 (35.37%), Postives = 81/164 (49.39%), Query Frame = -1
Query:  273 TLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGR--LYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGV-LANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 755
            T+D++ + F + GL+   DLV LSGAHT G A C  F  R  L    N    D +LD ++ Q L   C    +    + + D  T   FDN+Y+ NL   KGL Q+D  L       T  IVE    +Q +FF  +  S ++M  +    G +GEIR +C  VN
Sbjct:  169 TVDKMINIFSSKGLSVH-DLVVLSGAHTIGAAHCNTFNSRFKLDPKGNLELIDASLDNSYAQTLVNKCSSSLDPTTTVVDNDPETSSTFDNQYYKNLLAHKGLFQTDSALM--EDDRTRKIVEILANDQESFFDRWTESFLKMSLMGVRVGEEGEIRRSCSAVN 329          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER2_SOLLC (Suberization-associated anionic peroxidase 2 OS=Solanum lycopersicum GN=TAP2 PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.374e-15
Identity = 62/174 (35.63%), Postives = 80/174 (45.98%), Query Frame = -1
Query:  264 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 785
            A   LP P D L      F +     + ++VAL+GAHT G A+C            +G  +P        QL+  C        L   D TTP VFD  Y+ NL   +G++ SDQ L  T    TA  V  +  N   F ++F  +MI+MGNL P  G Q EIR  C RVN  S
Sbjct:  203 AINQLPAPSDNLTVQIQKFSDKNFTVR-EMVALAGAHTVGFARCS-------TVCTSGNVNPAA------QLQCNCSATLTDSDLQQLD-TTPAVFDKVYYDNLNNNQGIMFSDQVL--TGNTTTAGFVTTYSNNVTVFLEDFAAAMIKMGNLPPSAGAQLEIRDVCSRVNPTS 359          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER8_ARATH (Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 2.344e-15
Identity = 51/167 (30.54%), Postives = 80/167 (47.90%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            L GP  ++     +F+++G N    +  + G HT G A C  F+ R+         DP +D+    +L+K C    +  V    D  TP   DN+ +  +  ++ +L+ D  L       T +IV DF  N   F ++F  +M +MG +  LTG+ GEIR NCR  N
Sbjct:  155 LLGPTVSVATSIKAFKSIGFNVSTMVALIGGGHTVGVAHCSLFQDRI--------KDPKMDSKLRAKLKKSCRGPNDPSVF--MDQNTPFRVDNEIYRQMIQQRAILRIDDNLI--RDGSTRSIVSDFAYNNKLFKESFAEAMQKMGEIGVLTGDSGEIRTNCRAFN 309          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER42_ARATH (Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 8.907e-15
Identity = 55/172 (31.98%), Postives = 82/172 (47.67%), Query Frame = -1
Query:  267 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF---DVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 773
            LP   +++  +   F+++G+ D   LVAL G+H+ GR  C     RLY      + DP+L+   +  +   CP          +   D  TP V DN Y+ N+   KGLL  D +L       T  IV+   ++Q  FFK F  ++  +    PLTG++GEIR  C   N N
Sbjct:  166 LPDHNESISVVLEKFKSIGI-DTPGLVALLGSHSVGRTHCVKLVHRLYP-----EVDPSLNPDHVPHMLHKCPDSIPDPKAVQYVRNDRGTPMVLDNNYYRNILDNKGLLLVDHQL--AHDKRTRPIVKKMAKDQAYFFKEFTRAIQILSENNPLTGSKGEIRKQCNLANKN 329          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER44_ARATH (Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.519e-14
Identity = 52/170 (30.59%), Postives = 77/170 (45.29%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGAD--TAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            NLPGP   +      F   G+N    +  + G H+ G A C  F+ RL         D  ++ +    LR+ C    +       D  T    DN  +  +R ++G+L+ DQ L    G D  T+ IV  +  +   F K F  ++++MG +K LTG  GEIR NCR  N
Sbjct:  154 NLPGPTIPVSASIQLFAAQGMNTNDMVTLIGGGHSVGVAHCSLFQDRL--------SDRAMEPSLKSSLRRKCSSPNDPTTF--LDQKTSFTVDNAIYGEIRRQRGILRIDQNL----GLDRSTSGIVSGYASSNTLFRKRFAEALVKMGTIKVLTGRSGEIRRNCRVFN 309          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER2_MAIZE (Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.420e-14
Identity = 55/166 (33.13%), Postives = 80/166 (48.19%), Query Frame = -1
Query:  273 PFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGG--NGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 764
            P   L +L SSF   G++ + DLV LSGAHT GR+ C  F     D  +   P           LR  CP     +       DV TP+  D +Y+ N+     L  SD  L  +P  +TA +V D  +    +   F  +M++M +L+  TG+QG++R NCR +N
Sbjct:  177 PTSNLSDLASSFAVKGMSLE-DLVVLSGAHTVGRSHCSSFVSDRLDVPSDINP------ALAAFLRTRCPPNTTTSDDPTVMQDVVTPNAMDIQYYKNVLSHTVLFTSDAALLTSP--ETAKLVLDNAKIPGWWEDKFEKAMVKMASLEVKTGHQGQVRKNCRAIN 333          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PERA_IPOBA (Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 3.742e-13
Identity = 60/174 (34.48%), Postives = 79/174 (45.40%), Query Frame = -1
Query:  264 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 785
            AN  L GP + L    + F   G N   ++VAL G+HT G A+C      +  F N  +         +  L   C    N   L   D  TP  +D +YFS++   +GLL SD EL    G  T A V  +     AF  +F  +M++M NL P  G   EIR  C RVN NS
Sbjct:  192 ANTQLVGPNENLTSQLTKFAAKGFNGT-EMVALLGSHTIGFARCPLLC--ISTFINPAR---------VSTLNCNCSGTVNATGLVGLD-PTPTTWDQRYFSDVVNDQGLLFSDNELL--KGNTTNAAVRRYRDAMGAFLTDFAAAMVKMSNLPPSPGVALEIRDVCSRVNANS 350          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER29_ARATH (Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 4.887e-13
Identity = 55/177 (31.07%), Postives = 81/177 (45.76%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPD----VFDNKYFSNLRGRKGLLQSDQELFWTPGAD--TAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            A+  LP     +D   S F N G+  + + VA+ GAHT G   C     R   F+N       +D  F   LR  CP+       A       D    +FD  Y+ +    +G L+ D E+    GAD  T   VE F  +Q+ FF  F ++ +++ + K LTGN+G IR  C +V+
Sbjct:  171 ADSELPPSTADVDTTLSLFANKGMTIE-ESVAIMGAHTIGVTHCNNVLSR---FDNANATSENMDPRFQTFLRVACPEFSPTSQAAEATFVPNDQTSVIFDTAYYDDAIAGRGNLRIDSEI----GADPRTRPFVEAFAADQDRFFNAFSSAFVKLSSYKVLTGNEGVIRSVCDKVD 339          
The following BLAST results are available for this feature:
BLAST of CF832280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PERX_SOLTU6.168e-1635.88Suberization-associated anionic peroxidase OS=Sola... [more]
PER18_ARATH6.168e-1635.37Peroxidase 18 OS=Arabidopsis thaliana GN=PER18 PE=... [more]
PER2_SOLLC1.374e-1535.63Suberization-associated anionic peroxidase 2 OS=So... [more]
PER8_ARATH2.344e-1530.54Peroxidase 8 OS=Arabidopsis thaliana GN=PER8 PE=2 ... [more]
PER42_ARATH8.907e-1531.98Peroxidase 42 OS=Arabidopsis thaliana GN=PER42 PE=... [more]
PER44_ARATH1.519e-1430.59Peroxidase 44 OS=Arabidopsis thaliana GN=PER44 PE=... [more]
PER2_MAIZE4.420e-1433.13Peroxidase 2 OS=Zea mays GN=PER2 PE=2 SV=1[more]
PERA_IPOBA3.742e-1334.48Anionic peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER29_ARATH4.887e-1331.07Peroxidase 29 OS=Arabidopsis thaliana GN=PER29 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832280 ID=CF832280; Name=CF832280; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTGAAACACAAACAAAAGTTTAATTAATCTCCTTT
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCCAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGC
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