CF832280

Overview
NameCF832280
Unique NameCF832280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832280_ssr237 microsatellite CF832280_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:510..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER2_ORYSI (Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX112 PE=3 SV=2)

HSP 1 Score: 146.747 bits (369), Expect = 1.322e-34
Identity = 83/173 (47.98%), Postives = 105/173 (60.69%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQ--GGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN +LP P  +L EL  +F   GL D  D+VALSGAHT G+AQCQ FR RLY+  N       +D++F   L+  CP+  G     LA  D TTP+ FD+ Y++NL   KGLL SDQ LF   G  T   V +F  N  AF   F  +M++MGN+ PLTG QG+IRLNC +VN
Sbjct:  152 ANTDLPAPSSSLAELIGNFSRKGL-DVTDMVALSGAHTIGQAQCQNFRDRLYNETN-------IDSSFATALKANCPRPTGSGDSNLAPLDTTTPNAFDSAYYTNLLSNKGLLHSDQVLF--NGGSTDNTVRNFSSNTAAFNSAFTVAMVKMGNISPLTGTQGQIRLNCSKVN 314          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER36_ARATH (Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=2 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 2.254e-34
Identity = 77/169 (45.56%), Postives = 101/169 (59.76%), Query Frame = -1
Query:  273 QNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 779
            +N+P P  TL  + + F   GL D  DLVAL G+HT G ++C  FR RLY+      PD TL+  +   L++ CP  GN   L N D  TP  FDN Y+ NL   +GLL SD+ LF T   +T  +V+ +  N+ AFF+ F  SM++MGN+ PLTG  GEIR  CRRVN
Sbjct:  175 ENIPSPESTLQTILTMFNFQGL-DLTDLVALLGSHTIGNSRCIGFRQRLYNHTGNNDPDQTLNQDYASMLQQGCPISGNDQNLFNLDYVTPTKFDNYYYKNLVNFRGLLSSDEILF-TQSIETMEMVKYYAENEGAFFEQFAKSMVKMGNISPLTGTDGEIRRICRRVN 341          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER1_HORVU (Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.944e-34
Identity = 81/173 (46.82%), Postives = 105/173 (60.69%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQ--GGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN +LPG   +  EL+++F   G  + +D+VALSGAHT G+AQC  FR R+Y        D  ++A +   LR  CPQ  G   G LAN D TT + FDN Y++NL  +KGLL SDQ LF     D    V +F  N  AF  +F T+MI+MGN+ P TG QG+IRL+C RVN
Sbjct:  150 ANTDLPGFNSSRAELEAAFLKKGGLNTVDMVALSGAHTIGQAQCSTFRARIYG------GDTNINAAYAASLRANCPQTVGSGDGSLANLDTTTANTFDNAYYTNLMSQKGLLHSDQVLFNNDTTDNT--VRNFASNPAAFSSSFTTAMIKMGNIAPKTGTQGQIRLSCSRVN 314          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER14_ARATH (Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 1.119e-33
Identity = 74/172 (43.02%), Postives = 105/172 (61.05%), Query Frame = -1
Query:  267 NQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGN 782
            N++LP P +  D +   F N GLN   DLVALSG+HT G ++C  FR RLY+ + +G PD TL+ ++   LR+ CP+ G    L+  D+ +   FDN YF NL    GLL SDQ LF +    +  +V+ +  +Q  FF+ F  SMI+MG + PLTG+ GEIR  CR++N +
Sbjct:  168 NKDLPEPDNLFDTIFLRFSNEGLN-LTDLVALSGSHTIGFSRCTSFRQRLYNQSGSGSPDTTLEKSYAAILRQRCPRSGGDQNLSELDINSAGRFDNSYFKNLIENMGLLNSDQVLF-SSNEQSRELVKKYAEDQEEFFEQFAESMIKMGKISPLTGSSGEIRKKCRKINNS 337          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER9_ARATH (Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 1.461e-33
Identity = 72/171 (42.11%), Postives = 103/171 (60.23%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN N+P P  T+  L + F+  GLN++ DLV+LSG HT G A+C  F+ RLY+ N   +PD TL+ ++   LR +CP  G    ++  D+ +P  FDN YF  L   KGLL SD+ L       T A+V+ +  ++  FF+ F  SM+ MGN++PLTG  GEIR +C  +N
Sbjct:  177 ANTNIPAPNSTIQNLLTMFQRKGLNEE-DLVSLSGGHTIGVARCTTFKQRLYNQNGNNQPDETLERSYYYGLRSICPPTGGDNNISPLDLASPARFDNTYFKLLLWGKGLLTSDEVLLTGNVGKTGALVKAYAEDERLFFQQFAKSMVNMGNIQPLTGFNGEIRKSCHVIN 346          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PERN1_TOBAC (Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 4.252e-33
Identity = 81/172 (47.09%), Postives = 104/172 (60.47%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDF----GRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            +LP  FD++D  K  F   GLN + DLVAL+GAHT G A C   R RL++FN+TG PDP++DATFL QLR LCPQ G+       D  + + FD  YFSNLR  +G+L+SDQ+L WT  A T   V+ F    G     F   F  SM++M N++  TG  GEIR  C  +N
Sbjct:  162 DLPAFFDSVDIQKRKFLTKGLNTQ-DLVALTGAHTIGTAGCAVIRDRLFNFNSTGGPDPSIDATFLPQLRALCPQNGDASRRVGLDTGSVNNFDTSYFSNLRNGRGVLESDQKL-WT-DASTQVFVQRFLGIRGLLGLTFGVEFGRSMVKMSNIEVKTGTNGEIRKVCSAIN 330          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER4_ARATH (Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.616e-32
Identity = 78/171 (45.61%), Postives = 108/171 (63.16%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            A+++LP    +L++L   F   GLN + DLVALSGAHT G+AQC  F+GRLYD ++       +DA F    ++ CP  G    LA  D  TP+ FDN Y+ NL  +KGLL+SDQ LF T GA T +IV ++ RN + F  +F  +MI+MG+++ LTG+ G+IR  C  VN
Sbjct:  153 ADRDLPNFRASLNDLSELFLRKGLNTR-DLVALSGAHTLGQAQCLTFKGRLYDNSSD------IDAGFSSTRKRRCPVNGGDTTLAPLDQVTPNSFDNNYYRNLMQKKGLLESDQVLFGT-GASTDSIVTEYSRNPSRFASDFSAAMIKMGDIQTLTGSDGQIRRICSAVN 315          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER52_ARATH (Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=2 SV=1)

HSP 1 Score: 139.428 bits (350), Expect = 2.110e-32
Identity = 78/173 (45.09%), Postives = 106/173 (61.27%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQ--GGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN N+P P  +L +L SSF  VGL+ + D+VALSGAHT G+++C  FR R+Y+  N       ++A F    ++ CP+  G   G LA  DVTT   FDN YF NL  ++GLL SDQ LF   G  T +IV  +  N ++F  +F  +MI+MG++ PLTG+ GEIR  C R N
Sbjct:  162 ANSNIPAPTSSLSQLISSFSAVGLSTR-DMVALSGAHTIGQSRCTNFRARIYNETN-------INAAFATTRQRTCPRASGSGDGNLAPLDVTTAASFDNNYFKNLMTQRGLLHSDQVLF--NGGSTDSIVRGYSNNPSSFNSDFTAAMIKMGDISPLTGSSGEIRKVCGRTN 324          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER66_MAIZE (Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 5.197e-31
Identity = 74/168 (44.05%), Postives = 102/168 (60.71%), Query Frame = -1
Query:  273 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 776
            +LP P  +L +L S++    LN   D+VALSGAHT G+AQC  F   +Y+       D  +++ F   LR  CP+ G+   LA  D TTP+ FDN Y++NL  +KGLL SDQELF +   D+   V  F  + +AF   F T+M++MGNL P TG QG+IR +C +VN
Sbjct:  163 DLPPPTSSLGQLLSAYNKKNLNPT-DMVALSGAHTIGQAQCSSFNDHIYN-------DTNINSAFAASLRANCPRAGSTA-LAPLDTTTPNAFDNAYYTNLLSQKGLLHSDQELFNSGSTDST--VRSFASSTSAFNSAFATAMVKMGNLSPQTGTQGQIRRSCWKVN 319          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER67_ARATH (Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=2 SV=1)

HSP 1 Score: 134.42 bits (337), Expect = 6.788e-31
Identity = 74/169 (43.79%), Postives = 102/169 (60.36%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCP--QGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            +P P  TL  L + F+  GL+ + D+VALSGAHT GRAQC  FR R+Y+ +N       +D +F    R+ CP   G      AN DV +PD FD+ ++  L  +KGLL SDQ LF     D+  I   +  N NAF+++F  +MI+MG++ PLTG+ G+IR NCRR N
Sbjct:  158 IPPPITTLSNLINRFKAQGLSTR-DMVALSGAHTIGRAQCVTFRNRIYNASN-------IDTSFAISKRRNCPATSGSGDNKKANLDVRSPDRFDHGFYKQLLSKKGLLTSDQVLFNNGPTDSLVIA--YSHNLNAFYRDFARAMIKMGDISPLTGSNGQIRQNCRRPN 316          
The following BLAST results are available for this feature:
BLAST of CF832280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER2_ORYSI1.322e-3447.98Peroxidase 2 OS=Oryza sativa subsp. indica GN=PRX1... [more]
PER36_ARATH2.254e-3445.56Peroxidase 36 OS=Arabidopsis thaliana GN=PER36 PE=... [more]
PER1_HORVU2.944e-3446.82Peroxidase 1 OS=Hordeum vulgare PE=2 SV=1[more]
PER14_ARATH1.119e-3343.02Peroxidase 14 OS=Arabidopsis thaliana GN=PER14 PE=... [more]
PER9_ARATH1.461e-3342.11Peroxidase 9 OS=Arabidopsis thaliana GN=PER9 PE=1 ... [more]
PERN1_TOBAC4.252e-3347.09Peroxidase N1 OS=Nicotiana tabacum GN=poxN1 PE=1 S... [more]
PER4_ARATH1.616e-3245.61Peroxidase 4 OS=Arabidopsis thaliana GN=PER4 PE=2 ... [more]
PER52_ARATH2.110e-3245.09Peroxidase 52 OS=Arabidopsis thaliana GN=PER52 PE=... [more]
PER66_MAIZE5.197e-3144.05Peroxidase 66 OS=Zea mays GN=PER66 PE=1 SV=1[more]
PER67_ARATH6.788e-3143.79Peroxidase 67 OS=Arabidopsis thaliana GN=PER67 PE=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832280 ID=CF832280; Name=CF832280; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTGAAACACAAACAAAAGTTTAATTAATCTCCTTT
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCCAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGC
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