CF832280

Overview
NameCF832280
Unique NameCF832280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length785
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832280_ssr237 microsatellite CF832280_ssr237:237..248. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7925 contig Csv1_Contig7925:510..1294. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER1_MAIZE (Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.569e-19
Identity = 69/192 (35.94%), Postives = 97/192 (50.52%), Query Frame = -1
Query:  216 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNN---TGKPDPTLDATFLQQLRKLCPQGGNGG--VLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNIATRSSSSEGDLVSS 776
            +LP P  T   L   F+   L+ + D+V LSGAHT GR+ C  F  R+++ +    T   D  L  ++ Q LR LCP        +    D  TP+V DN Y+  L    GL  SD +L   P    AA+V  F  N+  + + F  +M++MG ++  TG  GE+RLNC    G  N +  SSSS  +L SS
Sbjct:  170 DLPPPTSTAQSLTDLFKAKELSVE-DMVVLSGAHTVGRSFCASFFKRVWNTSTNPATAIVDAGLSPSYAQLLRALCPSNTTQTTPITTAMDPGTPNVLDNNYYKLLPRGMGLFFSDNQLRVNP--QMAALVSSFASNETLWKEKFAAAMVKMGRIQVQTGTCGEVRLNC----GVVNPSLYSSSSAVELGSS 354          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER13_ARATH (Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.569e-19
Identity = 66/174 (37.93%), Postives = 94/174 (54.02%), Query Frame = -1
Query:  273 QNLPGPFDTLDELKSSFRNVGLNDKLDLVALS-GAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDF-GRNQNA---FFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 779
            +NLP   D+++ LKS FR  GL+D+ DLV LS GAHT G   C F   RL         DPT++  F Q LR  CPQGG+  V    D  +  VFDN+ F N++  +G++ SD  L+     +   I++ +   NQ++   F  +F  +MI+MG +    G +GEIR  C   N
Sbjct:  155 KNLPDVQDSINTLKSKFREKGLSDQ-DLVLLSAGAHTIGTTACFFVIPRL------DAQDPTINPEFFQILRSKCPQGGDVNVRIPLDWDSQFVFDNQIFQNIKNGRGVILSDSVLY--QDNNMKKIIDSYLETNQSSKANFAADFTKAMIKMGAIGVKIGAEGEIRRLCSATN 319          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER46_ARATH (Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.265e-18
Identity = 55/163 (33.74%), Postives = 84/163 (51.53%), Query Frame = -1
Query:  273 TLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLY--DFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 755
            TLD++  +F + GL+ + DLV LSGAHT G + C  F GR       N    D +LD ++ + L   C    +  +  + D  T  VFDN+Y+ NL   KGL Q+D  L       T  +VE+   ++ +FF+ +  S +++  +    G  GEIR +C  VN
Sbjct:  167 TLDQMIDAFSSKGLSIQ-DLVVLSGAHTIGASHCNAFNGRFQRDSKGNFEVIDASLDNSYAETLMNKCSSSESSSLTVSNDPETSAVFDNQYYRNLETHKGLFQTDSALM--EDNRTRTMVEELASDEESFFQRWSESFVKLSMVGVRVGEDGEIRRSCSSVN 326          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER31_ARATH (Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 6.590e-18
Identity = 59/168 (35.12%), Postives = 90/168 (53.57%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            LP P   + ++   F + G   + ++VALSGAH+ G + C+ F GR+   NNTG      +  F   L+K C        ++ F D+ TP+ FDN Y+ NL+   GLL+SD  L+  P   T   V+ + +NQ+ FFK+F  +M ++      TG +GEIR  C  +N
Sbjct:  158 LPLPSTPISKIIQQFESKGFTVQ-EMVALSGAHSIGFSHCKEFVGRV-GRNNTG-----YNPRFAVALKKACANYPKDPTISVFNDIMTPNKFDNMYYQNLKKGLGLLESDHGLYSDP--RTRYFVDLYAKNQDLFFKDFAKAMQKLSLFGIQTGRRGEIRRRCDAIN 316          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER6_ARATH (Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.124e-17
Identity = 57/168 (33.93%), Postives = 91/168 (54.17%), Query Frame = -1
Query:  273 LPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 773
            L  P  T+D + S F + GL  + ++VAL GAHT G + C+ F  R+++ ++   P   ++  +  +LRKLC    N   ++ F DV TP  FDN Y+ NL+   GLLQSD  + +     T ++V+ +  ++ AFF  F  +M ++      TG  GE+R  C + N
Sbjct:  159 LARPNMTMDHIISIFESSGLTVQ-EMVALVGAHTIGFSHCKEFASRIFNKSDQNGP-VEMNPKYAAELRKLCANYTNDEQMSAFNDVFTPGKFDNMYYKNLKHGYGLLQSDHAIAF--DNRTRSLVDLYAEDETAFFDAFAKAMEKVSEKNVKTGKLGEVRRRCDQYN 322          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER60_ARATH (Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.271e-17
Identity = 56/175 (32.00%), Postives = 91/175 (52.00%), Query Frame = -1
Query:  267 NLPGPFDTLDELKSSF--RNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFD--VTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLT-GNQGEIRLNCRRVNGN 776
            +LP P  T+ E  + F  R + LND   +V L G HT G   C F   RLY+F NT KPDP++D   +++L   CP+  +   + + D   T+ +  D  ++  ++  +G+L  DQ+L       T+ +V D   N N F   F  +M+ +G+++ ++    GEIR +CR    N
Sbjct:  159 DLPSPKMTVAETAAKFDQRKLSLND---MVLLLGGHTIGVTHCSFIMDRLYNFQNTQKPDPSMDPKLVEELSAKCPKSSSTDGIISLDQNATSSNTMDVSFYKEIKVSRGVLHIDQKL--AIDDLTSKMVTDIA-NGNDFLVRFGQAMVNLGSVRVISKPKDGEIRRSCRSTCNN 327          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER48_ARATH (Putative Peroxidase 48 OS=Arabidopsis thaliana GN=PER48 PE=2 SV=3)

HSP 1 Score: 88.9669 bits (219), Expect = 3.271e-17
Identity = 62/205 (30.24%), Postives = 92/205 (44.88%), Query Frame = -1
Query:  279 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCP-QGGNGGVLANFDVTTP----------------------------------DVFDNKYFSNLRGRKGLLQSDQELFWTPGAD-TAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRR 785
            A   LP P  TL  +   F   G N++ + V+L GAH+ G   C FF+ RLY+F+ TGKPDP L+  FLQ+L+  CP         A  D+  P                                  + F  +YF  L   KGL+ SDQ+L    G++ T   V  +  +   F + F  SM+++ +   LTG  G++R +C +
Sbjct:  199 AEHELPAPDATLSVILQRFSFRGFNER-ETVSLFGAHSIGITHCTFFKNRLYNFSATGKPDPELNPGFLQELKTKCPFSVSTSSPSAPPDIGLPPSLPASDSENSYGMSSGNRNDEVIDLSYNNEGGDENFGTRYFRRLMQNKGLMSSDQQLM---GSEVTEMWVRAYASDPLLFRREFAMSMMKLSSYNVLTGPLGQVRTSCSK 399          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER65_ARATH (Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=2 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 4.271e-17
Identity = 59/174 (33.91%), Postives = 87/174 (50.00%), Query Frame = -1
Query:  258 NLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANF-DVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNSNI 776
            N+P    T+ ++   F+  G + + ++VALSGAHT G + C+ F  RLY      + D  ++  F   L+ LC        +A F DV TP  FDN YF NL+   GLL SD  L       T   V+ +  N+ AFF++F  +M ++G +       GE+R  C   N N N+
Sbjct:  169 NVPMANQTVPDIHGIFKKNGFSLR-EMVALSGAHTIGFSHCKEFSDRLYG----SRADKEINPRFAAALKDLCKNHTVDDTIAAFNDVMTPGKFDNMYFKNLKRGLGLLASDHILI--KDNSTKPFVDLYATNETAFFEDFARAMEKLGTVGVKGDKDGEVRRRCDHFN-NLNV 334          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PERN_IPOBA (Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 7.286e-17
Identity = 63/171 (36.84%), Postives = 79/171 (46.20%), Query Frame = -1
Query:  273 ANQNLPGPFDTLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVN 785
            AN  LP PFD L    + F + G N + ++V L+GAHT G ++C          N       TL  T        CP   N   L   D  +P  FD KYF  L   +GLL SDQEL  +    TA  V  +     AF  +F  +M++M NL P  G Q EIR  C RVN
Sbjct:  193 ANTQLPAPFDNLSIQTAKFADKGFNQR-EMVVLAGAHTVGFSRCAVL---CTSTNLNQNRSATLQCT--------CPASANDTGLVGLD-PSPGTFDKKYFEELVKGQGLLFSDQELMQSNATVTA--VRRYRDATGAFLTDFAAAMVKMSNLPPSAGVQLEIRNVCSRVN 348          
BLAST of CF832280 vs. ExPASy Swiss-Prot
Match: PER1_SOLLC (Suberization-associated anionic peroxidase 1 OS=Solanum lycopersicum GN=TAP1 PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.243e-16
Identity = 66/176 (37.50%), Postives = 86/176 (48.86%), Query Frame = -1
Query:  264 ANQNLPGPFD--TLDELKSSFRNVGLNDKLDLVALSGAHTFGRAQCQFFRGRLYDFNNTGKPDPTLDATFLQQLRKLCPQGGNGGVLANFDVTTPDVFDNKYFSNLRGRKGLLQSDQELFWTPGADTAAIVEDFGRNQNAFFKNFVTSMIRMGNLKPLTGNQGEIRLNCRRVNGNS 785
            A   LP PFD  T+   K S +N  L +   +VAL+GAHT G A+C            +G  +P        QL+  C        L   D TTP +FD  Y+ NL   +G++ SDQ L  T  A TA  V D+  + N F  +F  +MI+MG+L P  G Q EIR  C RVN  S
Sbjct:  204 AINQLPAPFDNLTVQIQKFSDKNFTLRE---MVALAGAHTVGFARCS-------TVCTSGNVNPAA------QLQCNCSATLTDSDLQQLD-TTPTMFDKVYYDNLNSNQGIMFSDQVL--TGDATTAGFVTDYSNDVNVFLGDFAAAMIKMGDLPPSAGAQLEIRDVCSRVNPTS 360          
The following BLAST results are available for this feature:
BLAST of CF832280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 109
Match NameE-valueIdentityDescription
PER1_MAIZE1.569e-1935.94Peroxidase 1 OS=Zea mays GN=PER1 PE=1 SV=1[more]
PER13_ARATH1.569e-1937.93Peroxidase 13 OS=Arabidopsis thaliana GN=PER13 PE=... [more]
PER46_ARATH2.265e-1833.74Peroxidase 46 OS=Arabidopsis thaliana GN=PER46 PE=... [more]
PER31_ARATH6.590e-1835.12Peroxidase 31 OS=Arabidopsis thaliana GN=PER31 PE=... [more]
PER6_ARATH1.124e-1733.93Peroxidase 6 OS=Arabidopsis thaliana GN=PER6 PE=2 ... [more]
PER60_ARATH3.271e-1732.00Peroxidase 60 OS=Arabidopsis thaliana GN=PER60 PE=... [more]
PER48_ARATH3.271e-1730.24Putative Peroxidase 48 OS=Arabidopsis thaliana GN=... [more]
PER65_ARATH4.271e-1733.91Peroxidase 65 OS=Arabidopsis thaliana GN=PER65 PE=... [more]
PERN_IPOBA7.286e-1736.84Neutral peroxidase OS=Ipomoea batatas PE=1 SV=1[more]
PER1_SOLLC1.243e-1637.50Suberization-associated anionic peroxidase 1 OS=So... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J19_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J19, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832280 ID=CF832280; Name=CF832280; organism=Citrus sinensis; type=EST; length=785bp
TTTTTTTTTTTTTTTTTGAAACACAAACAAAAGTTTAATTAATCTCCTTT
AAAATACATAACATCTTTCAGACAAGACCATTAGATTAAACTCAAGTTTG
ATCGTTAATTTATTTGAAAGTACATAACATGTTTCAGGCAAAACGATCAG
ATTAAATTTGAGTTTGTTAAGCACAAAAACTCTCGCGCATATGCTGCAAG
CTAGCTTATTTAGAAAGAGCTGACCAAATCACCCTCTGATGATGATGATC
TTGTTGCAATATTACTGTTTCCATTGACCCTCCTGCAGTTCAATCTAATC
TCCCCTTGATTTCCTGTCAGTGGTTTCAAATTTCCCATTCTTATCATTGA
GGTCACAAAGTTTTTAAAGAAAGCATTCTGGTTCCTCCCAAAGTCCTCGA
CAATGGCAGCGGTATCGGCACCAGGAGTCCAAAACAACTCTTGATCACTC
TGCAGAAGGCCTTTGCGGCCTCTAAGATTGGAGAAGTATTTGTTGTCGAA
AACATCAGGTGTCGTGACATCAAAATTAGCAAGAACGCCGCCGTTTCCAC
CTTGTGGGCATAGTTTCCTCAGTTGTTGTAAGAAGGTTGCGTCTAGGGTT
GGGTCTGGCTTGCCAGTGTTGTTAAAATCGTATAATCTGCCCCTGAAAAA
TTGGCACTGAGCCCTTCCGAACGTGTGTGCTCCGGAGAGTGCAACAAGAT
CAAGCTTGTCATTGAGGCCAACATTTCTAAAACTAGATTTGAGCTCATCA
AGAGTATCAAATGGTCCTGGAAGATTCTGATTTGC
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