CF832284

Overview
NameCF832284
Unique NameCF832284
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length354
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:366..719. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.394e-19
Identity = 43/52 (82.69%), Postives = 49/52 (94.23%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+IEENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   92 NFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.789e-19
Identity = 45/52 (86.54%), Postives = 49/52 (94.23%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+I+ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:   94 NFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.561e-19
Identity = 44/52 (84.62%), Postives = 49/52 (94.23%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:   94 NFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.873e-18
Identity = 43/52 (82.69%), Postives = 47/52 (90.38%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            NYIEENDEVL+AGFGR GHAVGDIPGVRFK+VKV+ VSL ALF  KKE+PRS
Sbjct:   92 NYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.752e-18
Identity = 40/52 (76.92%), Postives = 48/52 (92.31%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N++EENDEVL++GFGR GHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   92 NFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 5.419e-17
Identity = 40/52 (76.92%), Postives = 47/52 (90.38%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+++ENDEVL++GFGRKG A GDIPGVRFKVVKV+GV L ALF EKKEKPR+
Sbjct:   92 NFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.059e-16
Identity = 39/52 (75.00%), Postives = 47/52 (90.38%), Query Frame = -3
Query:  197 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 352
            N+ EENDEVL+AGFGRK HAVGDIPGVRFKVV+++ VSLLAL+K  KE+P+S
Sbjct:   92 NFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.991e-16
Identity = 39/49 (79.59%), Postives = 44/49 (89.80%), Query Frame = -3
Query:  206 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 352
            N++ ENDEVL+AG GR+GHAVGDIPGVRFKVV V G+SLLALFK KKEK
Sbjct:   93 NFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.973e-15
Identity = 36/50 (72.00%), Postives = 45/50 (90.00%), Query Frame = -3
Query:  203 NYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 352
            NYI+END+VL+AG GR GH+VGDIPGVRFKVVKVS VSL+A+++  K+KP
Sbjct:   92 NYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          
BLAST of CF832284 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.635e-13
Identity = 34/49 (69.39%), Postives = 39/49 (79.59%), Query Frame = -3
Query:  203 YIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 349
            YIE NDEV + GFG+KG +VGDIPG+RFKV KV  VSL A+F  KKEKP
Sbjct:   90 YIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138          
The following BLAST results are available for this feature:
BLAST of CF832284 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
RS23_BRUMA3.394e-1982.6940S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_ASPFU5.789e-1986.5440S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_NEUCR7.561e-1984.6240S ribosomal protein S23 OS=Neurospora crassa GN=... [more]
RS23_CIOIN2.873e-1882.6940S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_CAEEL3.752e-1876.9240S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SCHPO5.419e-1776.9240S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS23_GILMI2.059e-1675.0040S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS12_TETTH5.991e-1679.5940S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_DICDI2.973e-1572.0040S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS23_ENCCU3.635e-1369.3940S ribosomal protein S23 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J23_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832284 ID=CF832284; Name=CF832284; organism=Citrus sinensis; type=EST; length=354bp
TTTTTTTTTTTTTTCACAAACCACTCAAGTAGAAGAGACAGATCCCTTTT
TACTAATAGTCTCAACAGAGGGAAAAAAACCAAAAACTTCTCTCAACAGC
AGTACATGATAAAGGAAAACAGTAATCAACGGGGATTAATGAAAATAAAG
TGCTAAAAAAAGAAAACATGGTGAAGTATCTTGAATCAGGAGTTTAGGAT
CTTGGTTTCTCCTTCTTCTCCTTGAAGAGGGCCAGAAGAGACACGCCTGA
AACCTTGACAACCTTAAATCTAACACCAGGAATATCTCCCACAGCATGCC
CCTTTCGACCAAATCCTGCAATAAGTACCTCGTCATTTTCTTCAATGTAG
TTCA
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