CF832285

Overview
NameCF832285
Unique NameCF832285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:365..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.512e-19
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.512e-19
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.512e-19
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 94.7449 bits (234), Expect = 1.512e-19
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.512e-19
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.512e-19
Identity = 45/53 (84.91%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I ENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_YEAST (40S ribosomal protein S23 OS=Saccharomyces cerevisiae GN=RPS23A PE=1 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.975e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++ ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   93 LNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_SACCA (40S ribosomal protein S23 OS=Saccharomyces castellii GN=RPS23A PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.975e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++ ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   93 LNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_SACBA (40S ribosomal protein S23 OS=Saccharomyces bayanus GN=RPS23A PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.975e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++ ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   93 LNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_CANGA (40S ribosomal protein S23 OS=Candida glabrata GN=RPS23 PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 1.975e-19
Identity = 46/53 (86.79%), Postives = 50/53 (94.34%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++ ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGVSLLAL+KEKKEKPRS
Sbjct:   93 LNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVSLLALWKEKKEKPRS 145
The following BLAST results are available for this feature:
BLAST of CF832285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS23_PIG1.512e-1984.9140S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_MOUSE1.512e-1984.9140S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]
RS23_ICTPU1.512e-1984.9140S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_HUMAN1.512e-1984.9140S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
RS23_CHILA1.512e-1984.9140S ribosomal protein S23 OS=Chinchilla lanigera G... [more]
RS23_BOVIN1.512e-1984.9140S ribosomal protein S23 OS=Bos taurus GN=RPS23 P... [more]
RS23_YEAST1.975e-1986.7940S ribosomal protein S23 OS=Saccharomyces cerevis... [more]
RS23_SACCA1.975e-1986.7940S ribosomal protein S23 OS=Saccharomyces castell... [more]
RS23_SACBA1.975e-1986.7940S ribosomal protein S23 OS=Saccharomyces bayanus... [more]
RS23_CANGA1.975e-1986.7940S ribosomal protein S23 OS=Candida glabrata GN=R... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832285 ID=CF832285; Name=CF832285; organism=Citrus sinensis; type=EST; length=358bp
TTGAACTACATTCATGAAAATGACGAGGTACTTATTGCAGGATTTGGTCG
AAAGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCA
AGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAA
CCAAGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTT
TAGCACTTTATTTTCATTAATCCCCGTTGATTACTGTTTTCCTTTATCAT
GTACTGCTGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTAT
TAGTAAATTAGTATCTGTCTCTTCTACTTGAGTGGTTTGTTGAAAAAAAA
AAAAAAAA
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