CF832285

Overview
NameCF832285
Unique NameCF832285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:365..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_BRUMA (40S ribosomal protein S23 OS=Brugia malayi GN=rps-23 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.400e-19
Identity = 43/53 (81.13%), Postives = 49/53 (92.45%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I ENDEVL+AGFGRKGHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   91 LNFIEENDEVLVAGFGRKGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.400e-19
Identity = 46/53 (86.79%), Postives = 49/53 (92.45%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+I ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:   93 LNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.746e-19
Identity = 45/53 (84.91%), Postives = 49/53 (92.45%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++ ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:   93 LNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145          
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_CIOIN (40S ribosomal protein S23 OS=Ciona intestinalis GN=RPS23 PE=2 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.724e-18
Identity = 43/53 (81.13%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LNYI ENDEVL+AGFGR GHAVGDIPGVRFK+VKV+ VSL ALF  KKE+PRS
Sbjct:   91 LNYIEENDEVLVAGFGRSGHAVGDIPGVRFKIVKVANVSLHALFTGKKERPRS 143          
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.864e-18
Identity = 40/53 (75.47%), Postives = 48/53 (90.57%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++ ENDEVL++GFGR GHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:   91 LNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143          
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_SCHPO (40S ribosomal protein S23 OS=Schizosaccharomyces pombe GN=rps23a PE=2 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 4.118e-17
Identity = 41/53 (77.36%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN++ ENDEVL++GFGRKG A GDIPGVRFKVVKV+GV L ALF EKKEKPR+
Sbjct:   91 LNFVDENDEVLLSGFGRKGKAKGDIPGVRFKVVKVAGVGLSALFHEKKEKPRA 143          
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_GILMI (40S ribosomal protein S23 OS=Gillichthys mirabilis GN=rps23 PE=2 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.669e-16
Identity = 39/53 (73.58%), Postives = 47/53 (88.68%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 159
            LN+  ENDEVL+AGFGRK HAVGDIPGVRFKVV+++ VSLLAL+K  KE+P+S
Sbjct:   91 LNFXEENDEVLVAGFGRKXHAVGDIPGVRFKVVEMANVSLLALYKGXKERPKS 143          
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS12_TETTH (40S ribosomal protein S12 OS=Tetrahymena thermophila PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.669e-16
Identity = 40/50 (80.00%), Postives = 45/50 (90.00%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 150
            LN++ ENDEVL+AG GR+GHAVGDIPGVRFKVV V G+SLLALFK KKEK
Sbjct:   92 LNFLAENDEVLVAGLGRQGHAVGDIPGVRFKVVCVKGISLLALFKGKKEK 141          
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_DICDI (40S ribosomal protein S23 OS=Dictyostelium discoideum GN=rps23 PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.730e-15
Identity = 37/51 (72.55%), Postives = 45/51 (88.24%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 153
            LNYI END+VL+AG GR GH+VGDIPGVRFKVVKVS VSL+A+++  K+KP
Sbjct:   91 LNYIQENDKVLVAGLGRSGHSVGDIPGVRFKVVKVSSVSLIAIYRGIKDKP 141          
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS23_ENCCU (40S ribosomal protein S23 OS=Encephalitozoon cuniculi GN=RPS23 PE=1 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.050e-12
Identity = 33/51 (64.71%), Postives = 39/51 (76.47%), Query Frame = 1
Query:    1 LNYIHENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 153
            + YI  NDEV + GFG+KG +VGDIPG+RFKV KV  VSL A+F  KKEKP
Sbjct:   88 VTYIESNDEVTVEGFGKKGRSVGDIPGIRFKVCKVQNVSLHAIFTGKKEKP 138          
The following BLAST results are available for this feature:
BLAST of CF832285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS23_BRUMA4.400e-1981.1340S ribosomal protein S23 OS=Brugia malayi GN=rps-... [more]
RS23_ASPFU4.400e-1986.7940S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_NEUCR5.746e-1984.9140S ribosomal protein S23 OS=Neurospora crassa GN=... [more]
RS23_CIOIN3.724e-1881.1340S ribosomal protein S23 OS=Ciona intestinalis GN... [more]
RS23_CAEEL4.864e-1875.4740S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_SCHPO4.118e-1777.3640S ribosomal protein S23 OS=Schizosaccharomyces p... [more]
RS23_GILMI2.669e-1673.5840S ribosomal protein S23 OS=Gillichthys mirabilis... [more]
RS12_TETTH2.669e-1680.0040S ribosomal protein S12 OS=Tetrahymena thermophi... [more]
RS23_DICDI1.730e-1572.5540S ribosomal protein S23 OS=Dictyostelium discoid... [more]
RS23_ENCCU1.050e-1264.7140S ribosomal protein S23 OS=Encephalitozoon cunic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01J23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832285 ID=CF832285; Name=CF832285; organism=Citrus sinensis; type=EST; length=358bp
TTGAACTACATTCATGAAAATGACGAGGTACTTATTGCAGGATTTGGTCG
AAAGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCA
AGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAA
CCAAGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTT
TAGCACTTTATTTTCATTAATCCCCGTTGATTACTGTTTTCCTTTATCAT
GTACTGCTGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTAT
TAGTAAATTAGTATCTGTCTCTTCTACTTGAGTGGTTTGTTGAAAAAAAA
AAAAAAAA
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