CF832285

Overview
NameCF832285
Unique NameCF832285
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length358
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1825 contig Csv1_Contig1825:365..722. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS12_PYRIL (30S ribosomal protein S12P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps12p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.759e-11
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 153
            LNYI+E+DEV+I   G  +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:   94 LNYINEHDEVIIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS12_PYRCJ (30S ribosomal protein S12P OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rps12p PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.759e-11
Identity = 33/52 (63.46%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 153
            LNYI+E+DEV+I   G  +G ++GDIPGVRFKVVKV+GVSL A+++ KK+KP
Sbjct:   94 LNYINEHDEVIIERIGGPEGKSLGDIPGVRFKVVKVNGVSLWAIWRGKKQKP 145
[Close]
BLAST of CF832285 vs. ExPASy Swiss-Prot
Match: RS12_PYRAE (30S ribosomal protein S12P OS=Pyrobaculum aerophilum GN=rps12p PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.522e-11
Identity = 32/52 (61.54%), Postives = 44/52 (84.62%), Query Frame = 1 
Query:    1 LNYIHENDEVLIAGFGR-KGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 153
            LNYI+E+DEV+I   G  +G ++GDIPGVRFKV+KV+GVSL A+++ KK+KP
Sbjct:   94 LNYINEHDEVVIERIGGPEGRSLGDIPGVRFKVIKVNGVSLWAIWRGKKQKP 145
The following BLAST results are available for this feature:
BLAST of CF832285 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 33
Match NameE-valueIdentityDescription
RS12_PYRIL5.759e-1161.5430S ribosomal protein S12P OS=Pyrobaculum islandic... [more]
RS12_PYRCJ5.759e-1163.4630S ribosomal protein S12P OS=Pyrobaculum calidifo... [more]
RS12_PYRAE7.522e-1161.5430S ribosomal protein S12P OS=Pyrobaculum aerophil... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01J23_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01J23, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832285 ID=CF832285; Name=CF832285; organism=Citrus sinensis; type=EST; length=358bp
TTGAACTACATTCATGAAAATGACGAGGTACTTATTGCAGGATTTGGTCG
AAAGGGGCATGCTGTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCA
AGGTTTCAGGCGTGTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAA
CCAAGATCCTAAACTCCTGATTCAAGATACTTCACCATGTTTTCTTTTTT
TAGCACTTTATTTTCATTAATCCCCGTTGATTACTGTTTTCCTTTATCAT
GTACTGCTGTTGAGAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTAT
TAGTAAATTAGTATCTGTCTCTTCTACTTGAGTGGTTTGTTGAAAAAAAA
AAAAAAAA
back to top