CF832308
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2) HSP 1 Score: 189.889 bits (481), Expect = 1.520e-47 Identity = 98/190 (51.58%), Postives = 125/190 (65.79%), Query Frame = -3 Query: 244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813 N +I HF K WQ V TWFNQP +I PRP AGP+RP+V T++Y+ K+RAGRGF+LEELK AGI K+ A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+PEEL ATQ+ GP MPI ++++ K+FKA+ LR+ RAN R FG R Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2) HSP 1 Score: 188.734 bits (478), Expect = 3.386e-47 Identity = 97/190 (51.05%), Postives = 125/190 (65.79%), Query Frame = -3 Query: 244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813 N +I HF K WQ V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MPI +T++ K+FKA+ LR+ RAN R FG R Sbjct: 6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3) HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47 Identity = 97/190 (51.05%), Postives = 125/190 (65.79%), Query Frame = -3 Query: 244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813 N +I HF K WQ V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MPI +T++ K+FKA+ LR+ RAN R FG R Sbjct: 6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4) HSP 1 Score: 187.193 bits (474), Expect = 9.852e-47 Identity = 95/190 (50.00%), Postives = 125/190 (65.79%), Query Frame = -3 Query: 244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813 N ++ HF K WQ V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MP+ +T++ K+FKA+ LR+ RAN R FG R Sbjct: 6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3) HSP 1 Score: 187.193 bits (474), Expect = 9.852e-47 Identity = 98/190 (51.58%), Postives = 124/190 (65.26%), Query Frame = -3 Query: 244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813 N +I HF K WQ V TWFNQP +I PRP +GPLRPVV T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+ E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP MPI +T++ K+FKA+ LR+ RAN R FG R Sbjct: 6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1) HSP 1 Score: 184.882 bits (468), Expect = 4.889e-46 Identity = 94/192 (48.96%), Postives = 124/192 (64.58%), Query Frame = -3 Query: 244 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 819 K NN+IPNGHF K WQ +VKTWFNQP + PRP AGPLRPVV T++Y+ K+RAGRGFTL E++AAG+ A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K G++ EE ATQ++GP MP+ P +T++ K FKAY LR R+ + G R Sbjct: 3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3) HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46 Identity = 96/190 (50.53%), Postives = 124/190 (65.26%), Query Frame = -3 Query: 244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813 N +I HF K WQ V TWFNQP +I PRP +GP+RP+V T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+ K GDS+ EEL ATQ+ GP M I +T++ K+FKA+ LR+ RAN R FG R Sbjct: 6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1) HSP 1 Score: 171.4 bits (433), Expect = 5.594e-42 Identity = 93/187 (49.73%), Postives = 119/187 (63.64%), Query Frame = -3 Query: 244 IPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 804 +PN HF K WQ YVKTWFNQP KI PRP +RP V T++YNMK+RAGRGFTLEELKAAG+ +++A TIGI VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+ A T V +PIT ++ + +T++ K+F A+ L ERA R+ GAR Sbjct: 9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPIT-QEAVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1) HSP 1 Score: 168.703 bits (426), Expect = 3.626e-41 Identity = 84/178 (47.19%), Postives = 116/178 (65.17%), Query Frame = -3 Query: 280 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLR 813 N+V+ + HF+K WQ VKTWFNQP +I PRP +GPLRP+V+ T +YNMK+R+GRGF+L+E++AAG+ K A TIGI+VDHRR+N S+EGLQ NV RLK YKAKL++FP K +A D+ +E+ ATQ++ P +PIT + K T + A+ +R Sbjct: 5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1) HSP 1 Score: 164.081 bits (414), Expect = 8.931e-40 Identity = 89/193 (46.11%), Postives = 117/193 (60.62%), Query Frame = -3 Query: 244 HNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLV--KVTQDMKSFKAYDKLRIERANERHFGAR 816 HN V+ N HF+KHWQ V+TWFNQP K+FPRP A L+PVV G T++YNMK+RAGRGFTLEELKAAG+ + A TIGI+VD RR N++ + L N QRLK Y++KLV+FPR+ K G++ EE+A A Q P+ + T + K T+ K F AY L+ + + G R Sbjct: 4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195 The following BLAST results are available for this feature:
BLAST of CF832308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 26
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832308 ID=CF832308; Name=CF832308; organism=Citrus sinensis; type=EST; length=836bpback to top |