CF832308

Overview
NameCF832308
Unique NameCF832308
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length836
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_CHICK (60S ribosomal protein L13 OS=Gallus gallus GN=RPL13 PE=2 SV=2)

HSP 1 Score: 189.889 bits (481), Expect = 1.520e-47
Identity = 98/190 (51.58%), Postives = 125/190 (65.79%), Query Frame = -3
Query:  244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813
            N +I   HF K WQ  V TWFNQP               +I PRP AGP+RP+V   T++Y+ K+RAGRGF+LEELK AGI K+ A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+PEEL  ATQ+ GP MPI           ++++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPVAGPIRPIVRCPTVRYHKKVRAGRGFSLEELKLAGINKRFARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSPEELKMATQLSGPVMPIRNVFKREKARVISEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_RAT (60S ribosomal protein L13 OS=Rattus norvegicus GN=Rpl13 PE=1 SV=2)

HSP 1 Score: 188.734 bits (478), Expect = 3.386e-47
Identity = 97/190 (51.05%), Postives = 125/190 (65.79%), Query Frame = -3
Query:  244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813
            N +I   HF K WQ  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKMARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARAITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_MOUSE (60S ribosomal protein L13 OS=Mus musculus GN=Rpl13 PE=2 SV=3)

HSP 1 Score: 187.963 bits (476), Expect = 5.776e-47
Identity = 97/190 (51.05%), Postives = 125/190 (65.79%), Query Frame = -3
Query:  244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813
            N +I   HF K WQ  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQQRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_HUMAN (60S ribosomal protein L13 OS=Homo sapiens GN=RPL13 PE=1 SV=4)

HSP 1 Score: 187.193 bits (474), Expect = 9.852e-47
Identity = 95/190 (50.00%), Postives = 125/190 (65.79%), Query Frame = -3
Query:  244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813
            N ++   HF K WQ  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MP+           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMVLKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPVRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_BOVIN (60S ribosomal protein L13 OS=Bos taurus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 187.193 bits (474), Expect = 9.852e-47
Identity = 98/190 (51.58%), Postives = 124/190 (65.26%), Query Frame = -3
Query:  244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813
            N +I   HF K WQ  V TWFNQP               +I PRP +GPLRPVV   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+  E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP MPI           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQRRVATWFNQPARKIRRRKARQAKARRIAPRPASGPLRPVVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKCTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMPIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_SPOFR (60S ribosomal protein L13 OS=Spodoptera frugiperda GN=RpL13 PE=2 SV=1)

HSP 1 Score: 184.882 bits (468), Expect = 4.889e-46
Identity = 94/192 (48.96%), Postives = 124/192 (64.58%), Query Frame = -3
Query:  244 KHNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 819
            K NN+IPNGHF K WQ +VKTWFNQP                + PRP AGPLRPVV   T++Y+ K+RAGRGFTL E++AAG+    A TIGI+VD RR+N+S+E LQ NVQRLK Y+A+L++FP + +K   G++  EE   ATQ++GP MP+    P      +T++ K FKAY  LR  R+  +  G R
Sbjct:    3 KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIKKAKAVAPRPAAGPLRPVVRCPTIRYHTKVRAGRGFTLREIRAAGLNPAFARTIGIAVDPRRRNKSVESLQVNVQRLKEYRARLILFP-KGKKVLKGEANEEERKLATQLRGPLMPVQQPAPKSIARAITEEEKDFKAYQYLRGARSIAKLVGIR 193          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_CRIGR (60S ribosomal protein L13 OS=Cricetulus griseus GN=RPL13 PE=2 SV=3)

HSP 1 Score: 184.496 bits (467), Expect = 6.386e-46
Identity = 96/190 (50.53%), Postives = 124/190 (65.26%), Query Frame = -3
Query:  244 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 813
            N +I   HF K WQ  V TWFNQP               +I PRP +GP+RP+V   T++Y+ K+RAGRGF+LEEL+ AGI KK+A TIGISVD RR+N+S E LQ+NVQRLK Y++KL++FPR+    K GDS+ EEL  ATQ+ GP M I           +T++ K+FKA+  LR+ RAN R FG R
Sbjct:    6 NGMILKPHFHKDWQRRVDTWFNQPARKIRRRKARQAKARRIAPRPASGPIRPIVRCPTVRYHTKVRAGRGFSLEELRVAGIHKKVARTIGISVDPRRRNKSTESLQANVQRLKEYRSKLILFPRKPSAPKKGDSSAEELKLATQLTGPVMRIRNVYKKEKARVITEEEKNFKAFASLRMARANARLFGIR 195          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_SCHPO (60S ribosomal protein L13 OS=Schizosaccharomyces pombe GN=rpl13 PE=1 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.594e-42
Identity = 93/187 (49.73%), Postives = 119/187 (63.64%), Query Frame = -3
Query:  244 IPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLRIERANERHFGAR 804
            +PN HF K WQ YVKTWFNQP               KI PRP    +RP V   T++YNMK+RAGRGFTLEELKAAG+ +++A TIGI VDHRR+NRS E LQ NV+R+K Y A L+VFPR+A + K GD+     A  T V    +PIT ++   +   +T++ K+F A+  L  ERA  R+ GAR
Sbjct:    9 LPNAHFHKDWQRYVKTWFNQPGRKLRRRQARQTKAAKIAPRPVEA-IRPAVKPPTIRYNMKVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFPRKAGQPKKGDATDVSGAEQTDV-AAVLPIT-QEAVEEAKPITEEAKNFNAFSTLSNERAYARYAGAR 192          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_SCHMA (60S ribosomal protein L13 OS=Schistosoma mansoni GN=RPL13 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 3.626e-41
Identity = 84/178 (47.19%), Postives = 116/178 (65.17%), Query Frame = -3
Query:  280 NNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLVKVTQDMKSFKAYDKLR 813
            N+V+ + HF+K WQ  VKTWFNQP               +I PRP +GPLRP+V+  T +YNMK+R+GRGF+L+E++AAG+  K A TIGI+VDHRR+N S+EGLQ NV RLK YKAKL++FP    K +A D+  +E+  ATQ++ P +PIT     +   K T     + A+  +R
Sbjct:    5 NDVLHHNHFRKKWQFMVKTWFNQPARKERRRQARKAKAQRIAPRPASGPLRPIVNCPTFRYNMKVRSGRGFSLQEVRAAGLNPKFARTIGIAVDHRRRNVSVEGLQRNVARLKAYKAKLILFPLNPAKPQAMDAKADEVKKATQLRRPVLPITQRAKRLKAHKPTSSELRYSAFHAIR 182          
BLAST of CF832308 vs. ExPASy Swiss-Prot
Match: RL13_DICDI (60S ribosomal protein L13 OS=Dictyostelium discoideum GN=rpl13 PE=3 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 8.931e-40
Identity = 89/193 (46.11%), Postives = 117/193 (60.62%), Query Frame = -3
Query:  244 HNNVIPNGHFKKHWQNYVKTWFNQPXXXXXXXXXXXXXXXKIFPRPTAGPLRPVVHGQTLKYNMKLRAGRGFTLEELKAAGIPKKLAPTIGISVDHRRKNRSLEGLQSNVQRLKTYKAKLVVFPRRARKFKAGDSAPEELATATQVQGPYMPITLEKPTVDLV--KVTQDMKSFKAYDKLRIERANERHFGAR 816
            HN V+ N HF+KHWQ  V+TWFNQP               K+FPRP A  L+PVV G T++YNMK+RAGRGFTLEELKAAG+  + A TIGI+VD RR N++ + L  N QRLK Y++KLV+FPR+    K G++  EE+A A Q   P+   +    T +    K T+  K F AY  L+   +  +  G R
Sbjct:    4 HNKVLSNDHFRKHWQMRVRTWFNQPARKIRRRNNRIEKAAKVFPRPIA-TLKPVVRGSTIRYNMKVRAGRGFTLEELKAAGLTAQYARTIGIAVDTRRVNKTQQSLTLNTQRLKNYQSKLVLFPRKVNAPKKGEATKEEVAKAVQTLKPFTVKSAIAVTCEQTPRKPTEAEKKFSAYATLKAADSKAKTVGIR 195          
The following BLAST results are available for this feature:
BLAST of CF832308 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13_CHICK1.520e-4751.5860S ribosomal protein L13 OS=Gallus gallus GN=RPL1... [more]
RL13_RAT3.386e-4751.0560S ribosomal protein L13 OS=Rattus norvegicus GN=... [more]
RL13_MOUSE5.776e-4751.0560S ribosomal protein L13 OS=Mus musculus GN=Rpl13... [more]
RL13_HUMAN9.852e-4750.0060S ribosomal protein L13 OS=Homo sapiens GN=RPL13... [more]
RL13_BOVIN9.852e-4751.5860S ribosomal protein L13 OS=Bos taurus GN=RPL13 P... [more]
RL13_SPOFR4.889e-4648.9660S ribosomal protein L13 OS=Spodoptera frugiperda... [more]
RL13_CRIGR6.386e-4650.5360S ribosomal protein L13 OS=Cricetulus griseus GN... [more]
RL13_SCHPO5.594e-4249.7360S ribosomal protein L13 OS=Schizosaccharomyces p... [more]
RL13_SCHMA3.626e-4147.1960S ribosomal protein L13 OS=Schistosoma mansoni G... [more]
RL13_DICDI8.931e-4046.1160S ribosomal protein L13 OS=Dictyostelium discoid... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01K12_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832308 ID=CF832308; Name=CF832308; organism=Citrus sinensis; type=EST; length=836bp
TTTTTTTTTTTTTTTTTAAAAAACAGACAACCATAGGGTAGGTCCCTTGC
AAATAATATAACCAAGAAATCTTCCCACATTCAAAATGAAATAACTTCTT
CAAACCTAAAGCTAAGAGATTGAAATCACTATAACAAAAAGATTCAAAAT
TGAAATGTAAAATGTAGTGCCACACTCAATGTGCTGCTTAAACAAGTTTG
TTTACTTCTTCTCTTCCTTTTCAGCCTCTGCAGCCTTCTTCAACCTGGCA
CCAAAATGGCGCTCGTTCGCACGCTCAATCCGGAGCTTGTCATAAGCCTT
GAAGGACTTCATATCTTGAGTAACCTTAACAAGGTCGACAGTAGGCTTCT
CAAGAGTAATGGGCATGTAAGGTCCTTGTACTTGAGTTGCTGTTGCCAAT
TCCTCAGGAGCAGAATCACCAGCCTTAAACTTGCGAGCACGTCTTGGGAA
AACAACCAACTTGGCCTTGTAAGTCTTCAGCCTCTGAACATTAGATTGAA
GACCCTCAAGAGAACGGTTCTTGCGTCGATGATCGACTGAAATGCCAATT
GTTGGAGCCAGTTTCTTGGGAATTCCAGCAGCCTTGAGTTCCTCAAGAGT
AAAGCCTCTGCCAGCCCTTAATTTCATGTTATATTTCAAAGTCTGGCCAT
GAACGACGGGGCGAAGAGGACCAGCAGTAGGGCGAGGGAAGATTTTAACG
GCCTTCTTTTGACGAGCAACTCGTCGTCGATTTTTGCGAGCCGGTTGGTT
AAACCAAGTCTTGACATAGTTCTGCCAATGCTTCTTAAAGTGCCCATTTG
GAATTACATTGTTGTGCTTCATTTTTGTTTACAGAG
back to top