CF832313

Overview
NameCF832313
Unique NameCF832313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length280
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8592 contig Csv1_Contig8592:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_RHOP2 (ATP synthase subunit beta OS=Rhodopseudomonas palustris (strain HaA2) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.669e-35
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SKCALVYGQMNEPPGARARV L+GLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  200 ESGVNKKGGGEG-SKCALVYGQMNEPPGARARVALSGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 288          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_NITWN (ATP synthase subunit beta OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.669e-35
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SKCALVYGQMNEPPGARARV L+GLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  200 ESGVNKKGGGEG-SKCALVYGQMNEPPGARARVALSGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 288          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_NITHX (ATP synthase subunit beta OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 5.669e-35
Identity = 76/91 (83.52%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SKCALVYGQMNEPPGARARV L+GLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  200 ESGVNKKGGGEG-SKCALVYGQMNEPPGARARVALSGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 288          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_XANP2 (ATP synthase subunit beta OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=atpD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.404e-35
Identity = 73/84 (86.90%), Postives = 76/84 (90.48%), Query Frame = 3
Query:   24 GDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            G   A SKCALVYGQMNEPPGARARV LTGLTVAEHFRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  208 GGSAAGSKCALVYGQMNEPPGARARVALTGLTVAEHFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 290          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_PELUB (ATP synthase subunit beta OS=Pelagibacter ubique GN=atpD PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.404e-35
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK   +   SK ALVYGQMNEPPGARARV LTGLTVAE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  195 DSGVIK--PEGPGSKAALVYGQMNEPPGARARVALTGLTVAEYFRDQEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 283          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_DICDI (ATP synthase subunit beta, mitochondrial OS=Dictyostelium discoideum GN=atp5b PE=1 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.404e-35
Identity = 76/91 (83.52%), Postives = 82/91 (90.11%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            E+GVIK   +   SK ALV+GQMNEPPGARARV LTGLTVAE+FRDAEGQDVLLFIDNIFRFTQA SE+SALLGRIPSAVGYQPTLATD+G
Sbjct:  302 EAGVIK--KEGPGSKVALVFGQMNEPPGARARVTLTGLTVAEYFRDAEGQDVLLFIDNIFRFTQAGSEMSALLGRIPSAVGYQPTLATDMG 390          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB1_RHOS4 (ATP synthase subunit beta 1 OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.404e-35
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIK+ D  ++SK ALVYGQMNEPPGARARV LTGLT+AE FRD  G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  198 ESGVIKI-DNLSESKVALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 287          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB1_RHOS1 (ATP synthase subunit beta 1 OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 7.404e-35
Identity = 74/91 (81.32%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVIK+ D  ++SK ALVYGQMNEPPGARARV LTGLT+AE FRD  G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  198 ESGVIKI-DNLSESKVALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 287          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_RHOS5 (ATP synthase subunit beta OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.649e-34
Identity = 73/91 (80.22%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            +SGVIK+ D  ++SK ALVYGQMNEPPGARARV LTGLT+AE FRD  G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  198 DSGVIKI-DNLSESKVALVYGQMNEPPGARARVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 287          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_RHISN (ATP synthase subunit beta OS=Rhizobium sp. (strain NGR234) GN=atpD PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 1.649e-34
Identity = 76/91 (83.52%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SK ALVYGQMNEPPGARARV LTGLT+AEHFRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  229 ESGVNKHGGGEG-SKAALVYGQMNEPPGARARVALTGLTIAEHFRD-EGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 317          
The following BLAST results are available for this feature:
BLAST of CF832313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_RHOP25.669e-3583.52ATP synthase subunit beta OS=Rhodopseudomonas palu... [more]
ATPB_NITWN5.669e-3583.52ATP synthase subunit beta OS=Nitrobacter winograds... [more]
ATPB_NITHX5.669e-3583.52ATP synthase subunit beta OS=Nitrobacter hamburgen... [more]
ATPB_XANP27.404e-3586.90ATP synthase subunit beta OS=Xanthobacter autotrop... [more]
ATPB_PELUB7.404e-3582.42ATP synthase subunit beta OS=Pelagibacter ubique G... [more]
ATPB_DICDI7.404e-3583.52ATP synthase subunit beta, mitochondrial OS=Dictyo... [more]
ATPB1_RHOS47.404e-3581.32ATP synthase subunit beta 1 OS=Rhodobacter sphaero... [more]
ATPB1_RHOS17.404e-3581.32ATP synthase subunit beta 1 OS=Rhodobacter sphaero... [more]
ATPB_RHOS51.649e-3480.22ATP synthase subunit beta OS=Rhodobacter sphaeroid... [more]
ATPB_RHISN1.649e-3483.52ATP synthase subunit beta OS=Rhizobium sp. (strain... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832313 ID=CF832313; Name=CF832313; organism=Citrus sinensis; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCCGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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