CF832313

Overview
NameCF832313
Unique NameCF832313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length280
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8592 contig Csv1_Contig8592:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_BRUSU (ATP synthase subunit beta OS=Brucella suis GN=atpD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.186e-34
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV KLG  +  SK ALVYGQMNEPPGARARV L+GLTVAE+FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  245 ESGVNKLGGGEG-SKAALVYGQMNEPPGARARVALSGLTVAENFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 333          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_BRUSI (ATP synthase subunit beta OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=atpD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.186e-34
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV KLG  +  SK ALVYGQMNEPPGARARV L+GLTVAE+FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  245 ESGVNKLGGGEG-SKAALVYGQMNEPPGARARVALSGLTVAENFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 333          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_BRUO2 (ATP synthase subunit beta OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=atpD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.186e-34
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV KLG  +  SK ALVYGQMNEPPGARARV L+GLTVAE+FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  245 ESGVNKLGGGEG-SKAALVYGQMNEPPGARARVALSGLTVAENFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 333          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_BRUME (ATP synthase subunit beta OS=Brucella melitensis GN=atpD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.186e-34
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV KLG  +  SK ALVYGQMNEPPGARARV L+GLTVAE+FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  245 ESGVNKLGGGEG-SKAALVYGQMNEPPGARARVALSGLTVAENFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 333          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_BRUC2 (ATP synthase subunit beta OS=Brucella canis (strain ATCC 23365 / NCTC 10854) GN=atpD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.186e-34
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV KLG  +  SK ALVYGQMNEPPGARARV L+GLTVAE+FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  245 ESGVNKLGGGEG-SKAALVYGQMNEPPGARARVALSGLTVAENFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 333          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_BRUAB (ATP synthase subunit beta OS=Brucella abortus GN=atpD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.186e-34
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV KLG  +  SK ALVYGQMNEPPGARARV L+GLTVAE+FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  245 ESGVNKLGGGEG-SKAALVYGQMNEPPGARARVALSGLTVAENFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 333          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_BRUA2 (ATP synthase subunit beta OS=Brucella abortus (strain 2308) GN=atpD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.186e-34
Identity = 75/91 (82.42%), Postives = 81/91 (89.01%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV KLG  +  SK ALVYGQMNEPPGARARV L+GLTVAE+FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  245 ESGVNKLGGGEG-SKAALVYGQMNEPPGARARVALSGLTVAENFRD-QGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 333          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_AGRT5 (ATP synthase subunit beta OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=atpD PE=3 SV=1)

HSP 1 Score: 142.124 bits (357), Expect = 8.186e-34
Identity = 75/91 (82.42%), Postives = 80/91 (87.91%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES V KLG  +  SK ALVYGQMNEPPGARARV LTGLT+AE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  208 ESNVNKLGGGEG-SKAALVYGQMNEPPGARARVALTGLTIAENFRD-EGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 296          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_SINMW (ATP synthase subunit beta OS=Sinorhizobium medicae (strain WSM419) GN=atpD PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 1.069e-33
Identity = 76/91 (83.52%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV K G  +  SK ALVYGQMNEPPGARARV LTGLTVAE FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  233 ESGVNKHGGGEG-SKAALVYGQMNEPPGARARVALTGLTVAEQFRD-EGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 321          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_RHORU (ATP synthase subunit beta OS=Rhodospirillum rubrum GN=atpD PE=1 SV=3)

HSP 1 Score: 141.739 bits (356), Expect = 1.069e-33
Identity = 74/92 (80.43%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKL-GDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ++G+I L GDK   SK ALVYGQMNEPPGARARV L GLT AE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  198 DAGIIDLEGDK---SKVALVYGQMNEPPGARARVALAGLTQAEYFRDEEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 286          
The following BLAST results are available for this feature:
BLAST of CF832313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_BRUSU8.186e-3482.42ATP synthase subunit beta OS=Brucella suis GN=atpD... [more]
ATPB_BRUSI8.186e-3482.42ATP synthase subunit beta OS=Brucella suis (strain... [more]
ATPB_BRUO28.186e-3482.42ATP synthase subunit beta OS=Brucella ovis (strain... [more]
ATPB_BRUME8.186e-3482.42ATP synthase subunit beta OS=Brucella melitensis G... [more]
ATPB_BRUC28.186e-3482.42ATP synthase subunit beta OS=Brucella canis (strai... [more]
ATPB_BRUAB8.186e-3482.42ATP synthase subunit beta OS=Brucella abortus GN=a... [more]
ATPB_BRUA28.186e-3482.42ATP synthase subunit beta OS=Brucella abortus (str... [more]
ATPB_AGRT58.186e-3482.42ATP synthase subunit beta OS=Agrobacterium tumefac... [more]
ATPB_SINMW1.069e-3383.52ATP synthase subunit beta OS=Sinorhizobium medicae... [more]
ATPB_RHORU1.069e-3380.43ATP synthase subunit beta OS=Rhodospirillum rubrum... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01K15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832313 ID=CF832313; Name=CF832313; organism=Citrus sinensis; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCCGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
back to top