CF832313

Overview
NameCF832313
Unique NameCF832313
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length280
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig8592 contig Csv1_Contig8592:1..280. BLAST: Citrus Unigene V1 Contigs to Populus V2 proteins
Homology
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_THAPS (ATP synthase subunit beta, chloroplastic OS=Thalassiosira pseudonana GN=atpB PE=3 SV=1)

HSP 1 Score: 139.043 bits (349), Expect = 6.930e-33
Identity = 72/91 (79.12%), Postives = 78/91 (85.71%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI      A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  201 ESGVIN-SSNFAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 290          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_MOOTA (ATP synthase subunit beta OS=Moorella thermoacetica (strain ATCC 39073) GN=atpD PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.050e-33
Identity = 71/91 (78.02%), Postives = 79/91 (86.81%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV++        K ALV+GQMNEPPGAR RVGLTGLT+AE+FRDAEGQDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  196 ESGVLE--------KTALVFGQMNEPPGARLRVGLTGLTMAEYFRDAEGQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMG 278          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_BRASO (ATP synthase subunit beta OS=Bradyrhizobium sp. (strain ORS278) GN=atpD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.050e-33
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   27 DKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            D    SKCALV+GQMNEPPGARARV LTGLT+AE FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  211 DPSVKSKCALVFGQMNEPPGARARVALTGLTIAEDFRD-KGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 292          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_BRAJA (ATP synthase subunit beta OS=Bradyrhizobium japonicum GN=atpD PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.050e-33
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   27 DKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            D    SKCALV+GQMNEPPGARARV LTGLT+AE FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  208 DPSVKSKCALVFGQMNEPPGARARVALTGLTIAEDFRD-KGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 289          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB1_BRASB (ATP synthase subunit beta 1 OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=atpD1 PE=3 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 9.050e-33
Identity = 69/83 (83.13%), Postives = 74/83 (89.16%), Query Frame = 3
Query:   27 DKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            D    SKCALV+GQMNEPPGARARV LTGLT+AE FRD +GQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  211 DPSVKSKCALVFGQMNEPPGARARVALTGLTIAEDFRD-KGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 292          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_DESPS (ATP synthase subunit beta OS=Desulfotalea psychrophila GN=atpD PE=3 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 1.182e-32
Identity = 72/91 (79.12%), Postives = 75/91 (82.42%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGV+         K ALVYGQM EPPGARARV LTGLT AE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATDLG
Sbjct:  204 ESGVLP--------KAALVYGQMTEPPGARARVALTGLTAAEYFRDEEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDLG 286          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_SPHWW (ATP synthase subunit beta OS=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 66/78 (84.62%), Postives = 73/78 (93.59%), Query Frame = 3
Query:   42 SKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            SK ALV+GQMNEPPGARARV L+GLT+AE+FRD EGQDVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTL+TD+G
Sbjct:  219 SKVALVFGQMNEPPGARARVALSGLTIAEYFRDVEGQDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLSTDMG 296          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_ROSDO (ATP synthase subunit beta OS=Roseobacter denitrificans (strain ATCC 33942 / OCh 114) GN=atpD PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 71/91 (78.02%), Postives = 76/91 (83.52%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ES VI + D   +SK ALVYGQMNEPPGAR RV LTGLT+AE FRD  G DVL F+DNIFRFTQA SEVSALLGRIPSAVGYQPTLATD+G
Sbjct:  197 ESSVI-VPDNLTESKVALVYGQMNEPPGARMRVALTGLTLAEQFRDQSGTDVLFFVDNIFRFTQAGSEVSALLGRIPSAVGYQPTLATDMG 286          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_PSEAK (ATP synthase subunit beta, chloroplastic OS=Pseudendoclonium akinetum GN=atpB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 72/92 (78.26%), Postives = 79/92 (85.87%), Query Frame = 3
Query:    3 ESGVIKLGDKQADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGG 278
            ESGVI+  +  A SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRF QA SEVSALLGR+PSAVGYQPTLAT++GG
Sbjct:  209 ESGVIQEKNMSA-SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDINKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLATEMGG 299          
BLAST of CF832313 vs. ExPASy Swiss-Prot
Match: ATPB_PHATR (ATP synthase subunit beta, chloroplastic OS=Phaeodactylum tricornutum GN=atpB PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 1.544e-32
Identity = 73/92 (79.35%), Postives = 80/92 (86.96%), Query Frame = 3
Query:    3 ESGVIKLGDKQ-ADSKCALVYGQMNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLG 275
            ESGVI   +K  A+SK ALVYGQMNEPPGAR RVGLT LT+AE+FRD   QDVLLFIDNIFRFTQA SEVSALLGR+PSAVGYQPTLAT++G
Sbjct:  202 ESGVIN--EKNFAESKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMG 291          
The following BLAST results are available for this feature:
BLAST of CF832313 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
ATPB_THAPS6.930e-3379.12ATP synthase subunit beta, chloroplastic OS=Thalas... [more]
ATPB_MOOTA9.050e-3378.02ATP synthase subunit beta OS=Moorella thermoacetic... [more]
ATPB_BRASO9.050e-3383.13ATP synthase subunit beta OS=Bradyrhizobium sp. (s... [more]
ATPB_BRAJA9.050e-3383.13ATP synthase subunit beta OS=Bradyrhizobium japoni... [more]
ATPB1_BRASB9.050e-3383.13ATP synthase subunit beta 1 OS=Bradyrhizobium sp. ... [more]
ATPB_DESPS1.182e-3279.12ATP synthase subunit beta OS=Desulfotalea psychrop... [more]
ATPB_SPHWW1.544e-3284.62ATP synthase subunit beta OS=Sphingomonas wittichi... [more]
ATPB_ROSDO1.544e-3278.02ATP synthase subunit beta OS=Roseobacter denitrifi... [more]
ATPB_PSEAK1.544e-3278.26ATP synthase subunit beta, chloroplastic OS=Pseude... [more]
ATPB_PHATR1.544e-3279.35ATP synthase subunit beta, chloroplastic OS=Phaeod... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K15_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K15, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832313 ID=CF832313; Name=CF832313; organism=Citrus sinensis; type=EST; length=280bp
TTGAGAGTGGTGTTATTAAGCTAGGGGACAAGCAGGCTGACAGCAAATGT
GCACTTGTCTATGGTCAAATGAATGAGCCACCCGGTGCTCGTGCTCGTGT
GGGTCTGACTGGGCTTACTGTTGCCGAGCACTTCCGTGATGCTGAGGGGC
AAGATGTGCTGCTCTTCATCGACAACATTTTCCGTTTCACCCAAGCTAAC
TCAGAGGTGTCTGCTTTGCTTGGTCGTATCCCATCTGCTGTCGGTTACCA
ACCAACGTTGGCTACGGATCTTGGAGGCCT
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