CF832314

Overview
NameCF832314
Unique NameCF832314
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length684
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CF832314 vs. ExPASy Swiss-Prot
Match: 13SB_FAGES (13S globulin basic chain OS=Fagopyrum esculentum PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.024e-11
Identity = 35/135 (25.93%), Postives = 70/135 (51.85%), Query Frame = -2 
Query:  273 NTKNLPLVGEVGCGADLVRLDGKAMCSPGFSCDSALQVTYIVRGSGRAQIVGPDGKRVLETTVKAGNLFIVPRFYVVSKIADPDGLAWFSIITTPNPIFTHLAGSIGTWKSLSPSVLEAAFNVPSDVEKQFRSKR 677
            N++ LP +  +   A+   L    + +P ++ + A    Y+ RG+ + Q+VG +G +V +  VK G L IVP+++ V K A   G  + +  T  N +   L G +  ++++   VL ++F + S+  ++ +  R
Sbjct:   35 NSQKLPALRSLQMSAERGFLYSNGIYAPHWNIN-AHSALYVTRGNAKVQVVGDEGNKVFDDEVKQGQLIIVPQYFAVIKKAGNQGFEYVAFKTNDNAMINPLVGRLSAFRAIPEEVLRSSFQISSEEAEELKYGR 168
The following BLAST results are available for this feature:
BLAST of CF832314 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
13SB_FAGES8.024e-1125.9313S globulin basic chain OS=Fagopyrum esculentum P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K16_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K16, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832314 ID=CF832314; Name=CF832314; organism=Citrus sinensis; type=EST; length=684bp
TTTTTTTTTTTTTTTTTCTTGCAAAGGCAATTTTATAAGAGACCCTTAGA
ACAATTCAGTTTTATATCCAACAGAAAAACTTAAAAAACTACAAAAGAAA
ACTTAAAACGGGCACCACACCTAACAACATCCACTACTACGAACAAGAAC
CCTAAACACTTCTTTGTTTTTTCCTTTTAATTTCTCTTATTGAAACAGAT
AGAGAGAAAATGCAAGGGTGCTGGCTGCTGCTTCGCTTAGTTCGGCGGGG
GGAAGAAAATAGCCTCATTGGCCCTCTTTGATCGGAACTGCTTTTCTACA
TCGGAAGGAACATTGAAAGCTGCCTCCAACACTGAAGGAGATAATGACTT
CCACGTTCCAATGCTGCCAGCCAAGTGTGTGAATATAGGATTGGGAGTGG
TGATGATTGAAAACCAAGCCAAGCCATCAGGGTCAGCAATCTTAGAAACA
ACATAGAACCTTGGAACTATGAACAGATTACCAGCCTTTACAGTTGTTTC
CAAGACTCTTTTGCCATCAGGACCAACAATTTGGGCACGGCCGCTGCCCC
GAACAATGTAAGTCACTTGCAGGGCTGAATCACAAGAGAAACCAGGAGAA
CACATGGCTTTGCCATCCAACCTAACAAGATCAGCACCACATCCAACCTC
ACCAACAAGAGGAAGGTTCTTAGTATTCAAAACC
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