CF832318

Overview
NameCF832318
Unique NameCF832318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length781
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig6307 contig Csv1_Contig6307:179..958. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: COFI_CRYNE (Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 1.145e-22
Identity = 52/135 (38.52%), Postives = 87/135 (64.44%), Query Frame = -3
Query:  342 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 743
            +SG+    +C  KF ELK  +   ++++ + E ++ ++V K  E  + ++ F A LP ++CR+AVYD++F +      ++++ FI WSPD A V++KMI+ASSK+  +R LDGI  E+QATD SE+  D   ++A
Sbjct:    2 SSGVQPTQECLEKFQELKTGKKLTYVIYGLSEDKRSIVVLKASED-KDFDSFVAELPEKDCRWAVYDFEFTLPGGEGVRNKLCFIVWSPDDASVKNKMIFASSKEAIRRRLDGIHTEIQATDFSEITKDALFEKA 135          
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: COF1_DICDI (Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 1.495e-22
Identity = 53/133 (39.85%), Postives = 81/133 (60.90%), Query Frame = -3
Query:  345 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 743
            +SG+A+  +C   F +LK  R Y  I+++I +  K++IV+       ++++F   LP  ECRY V DY +   E  QKS+I F+AW PDTA ++ KM+  SSKD  ++   GIQVE+Q TD SE+    F ++
Sbjct:    2 SSGIALAPNCVSTFNDLKLGRKYGGIIYRISDDSKEIIVDSTLPAGCSFDEFTKCLPENECRYVVLDYQY-KEEGAQKSKICFVAWCPDTANIKKKMMATSSKDSLRKACVGIQVEIQGTDASEVKDSCFYEK 133          
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: COFI_PICAN (Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 2.550e-22
Identity = 50/128 (39.06%), Postives = 83/128 (64.84%), Query Frame = -3
Query:  360 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDFVTAE-NCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 740
            SG+AV D+    F +LK  + ++ I++K+ + + +++V+        Y+ F   LP  +CRYAVYD+++   + + ++++I F  WSPDTA VR+KM+YASSKD  +R L+GI  E+Q TD SE+  +
Sbjct:    4 SGVAVSDEALKAFNDLKLGKKFKSIIYKLNDAKTEIVVDSTSTE-DAYDAFVEDLPENDCRYAVYDFEYEVGQGDGKRNKIVFYQWSPDTASVRAKMVYASSKDALRRALNGIGTEIQGTDFSEVAYE 130          
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: COFI_ASHGO (Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1)

HSP 1 Score: 105.145 bits (261), Expect = 4.350e-22
Identity = 50/128 (39.06%), Postives = 83/128 (64.84%), Query Frame = -3
Query:  360 SGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEECRYAVYDYDF-VTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 740
            SG+AV D+    F +LK  + Y+F++F +   +  +IV++     + Y+ F   LP ++C YAVYD+++ ++    ++S+I F  WSPDTA +RSKM+YASSKD  +R L+G+  ++Q TD SE+  +
Sbjct:    4 SGVAVADESLTAFNDLKLGKKYKFVLFGLNADKTSIIVKETSNE-RDYDVFLEKLPEDDCLYAVYDFEYEISGAEGKRSKIVFFTWSPDTAPIRSKMVYASSKDALRRALNGVSSDIQGTDFSEVAYE 130          
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: CADF_DROME (Cofilin/actin-depolymerizing factor homolog OS=Drosophila melanogaster GN=tsr PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 6.281e-21
Identity = 49/141 (34.75%), Postives = 88/141 (62.41%), Query Frame = -3
Query:  345 ASGMAVHDDCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPA---EECRYAVYDYDFV-----TAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 743
            ASG+ V D CK  + E+K  + +R+++F I + +KQ+ VE + +    Y+ F   +      ECRY ++D++++     T+E+ +K ++F ++W PDTA+V+ KM+Y+SS D  K+ L G+Q  +QATD SE   +  +++
Sbjct:    2 ASGVTVSDVCKTTYEEIKKDKKHRYVIFYIRD-EKQIDVETVADRNAEYDQFLEDIQKCGPGECRYGLFDFEYMHQCQGTSESSKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASREAVEEK 141          
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: COFI_GIBZE (Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 5.879e-19
Identity = 52/132 (39.39%), Postives = 78/132 (59.09%), Query Frame = -3
Query:  360 DCKLKFLELKAKRTYRFIVFKIEEKQKQVIVEKLGEPTQTYEDFAASLPAEEC-----------RYAVYDYDFVTAENCQ-KSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLD 719
            DC   F +LK  + Y+FIV+K+ +  K+++++K  E ++ +EDF  +L                RYAVYD+++  A     +++I FIAWSPD A ++ KMIYASSK+  KR L GI  ELQA D  ++  D
Sbjct:    2 DCITAFNDLKLNKKYKFIVYKLSDDYKEIVIDKASE-SRDWEDFRETLVNATAKSRTGAVGKGPRYAVYDFEYNLASGDGIRNKITFIAWSPDDAGIQPKMIYASSKEALKRSLTGIATELQANDTDDIEYD 132          
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: COF2_CHICK (Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 7.186e-17
Identity = 56/152 (36.84%), Postives = 87/152 (57.24%), Query Frame = -3
Query:  342 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDRA 743
            ASG+ V+D+    F ++K          K+  + ++F + + +KQ+IVE+     +G+   T ED    F   LP  +CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR+
Sbjct:    2 ASGVTVNDEVIKVFNDMKVRKSSTPEEIKKRKKAVLFCLSDDKKQIIVEEAKQILVGDIGDTVEDPYTAFVKLLPLNDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDRS 147          
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: COF2_XENLA (Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.385e-17
Identity = 56/151 (37.09%), Postives = 83/151 (54.97%), Query Frame = -3
Query:  345 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK--------LGEPTQT-YEDFAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQATDPSEMGLDVFKDR 743
            ASG+ V+D+    F E+K          K+  + ++F +   +K++IVE+        +GE  Q  Y  F   LP ++CRY +YD  + T E+ +K  + FI W+PD A ++SKMIYASSKD  K++  GI+ E Q       GLD  KDR
Sbjct:    2 ASGVTVNDEVIKVFNEMKVRKSSTPEEIKKRKKAVLFCLSPDKKEIIVEETKQILVGDIGEAVQDPYRTFVNLLPLDDCRYGLYDATYETKES-KKEDLVFIFWAPDNAPLKSKMIYASSKDAIKKKFTGIKHEWQVN-----GLDDIKDR 146          
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: COF1_RAT (Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.226e-16
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  387 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 743
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYTTFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
BLAST of CF832318 vs. ExPASy Swiss-Prot
Match: COF1_HUMAN (Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3)

HSP 1 Score: 87.0409 bits (214), Expect = 1.226e-16
Identity = 53/137 (38.69%), Postives = 83/137 (60.58%), Query Frame = -3
Query:  387 ASGMAVHDDCKLKFLELKA---------KRTYRFIVFKIEEKQKQVIVEK-----LGEPTQTYED----FAASLPAEECRYAVYDYDFVTAENCQKSRIFFIAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 743
            ASG+AV D     F ++K          K+  + ++F + E +K +I+E+     +G+  QT +D    F   LP ++CRYA+YD  + T E+ +K  + FI W+P++A ++SKMIYASSKD  K++L GI+ ELQA
Sbjct:    2 ASGVAVSDGVIKVFNDMKVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDKDCRYALYDATYETKES-KKEDLVFIFWAPESAPLKSKMIYASSKDAIKKKLTGIKHELQA 137          
The following BLAST results are available for this feature:
BLAST of CF832318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 75
Match NameE-valueIdentityDescription
COFI_CRYNE1.145e-2238.52Cofilin OS=Cryptococcus neoformans GN=COF1 PE=3 SV... [more]
COF1_DICDI1.495e-2239.85Cofilin-1 OS=Dictyostelium discoideum GN=cofA PE=1... [more]
COFI_PICAN2.550e-2239.06Cofilin OS=Pichia angusta GN=COF1 PE=2 SV=1[more]
COFI_ASHGO4.350e-2239.06Cofilin OS=Ashbya gossypii GN=COF1 PE=3 SV=1[more]
CADF_DROME6.281e-2134.75Cofilin/actin-depolymerizing factor homolog OS=Dro... [more]
COFI_GIBZE5.879e-1939.39Cofilin OS=Gibberella zeae GN=COF1 PE=3 SV=1[more]
COF2_CHICK7.186e-1736.84Cofilin-2 OS=Gallus gallus GN=CFL2 PE=1 SV=2[more]
COF2_XENLA9.385e-1737.09Cofilin-2 OS=Xenopus laevis GN=cfl2 PE=2 SV=1[more]
COF1_RAT1.226e-1638.69Cofilin-1 OS=Rattus norvegicus GN=Cfl1 PE=1 SV=3[more]
COF1_HUMAN1.226e-1638.69Cofilin-1 OS=Homo sapiens GN=CFL1 PE=1 SV=3[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01K18_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01K18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832318 ID=CF832318; Name=CF832318; organism=Citrus sinensis; type=EST; length=781bp
TTATAAAGTTAAAATGAAACAGCCATTTTCAAAGTAAAAACAACCCTAAC
AGAGGGGTATCCATCCCCCATCAATTGAAACACCCTTACCTTGACGAAAT
AGCTATAAGTAGCCACTCATCCCATAACTTCCACACCACAACAAATCGAT
AAAGACATCATAAAGACCACTGAAATGGTTCTAGACGAGAATACTGCATC
GGTGAAACTTGAACAACAAACCAATATCATAATTCAGTTAGATTCAAGCT
GCCGCCACAAACTATTAACATTTCACCTTTAGGTAAAGCACAAAAGATAA
AAACAATCTCAATTGCTGAGATCAGGAGCCTTTATTTAGTTGGCACGGTC
TTTAAATACGTCAAGACCCATCTCAGATGGATCAGTTGCCTGCAGCTCCA
CTTGAATGCCATCTAGCTCTCTCTTGAACCTGTCCTTGGAGCTTGCATAA
ATCATCTTGCTTCTTACTCTTGCAGTGTCGGGAGACCATGCAATGAAGAA
AATCCTGCTTTTTTGGCAGTTCTCTGCGGTAACAAAATCATAATCATACA
CAGCATATCGGCACTCCTCAGCAGGAAGGCTGGCAGCAAAATCTTCATAG
GTTTGAGTTGGCTCACCAAGTTTTTCCACAATGACCTGCTTCTGCTTCTC
CTCAATCTTAAATACTATGAAGCGGTAGGTTCTCTTGGCTTTCAACTCCA
AGAACTTTAGCTTACAGTCATCATGTACAGCCATCCCAGAAGCAGCGTTA
GCCATGGGTTCTAGGATCAAGATCTAAGAAG
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