CF832327

Overview
NameCF832327
Unique NameCF832327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length646
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:730..1375. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832327 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.561e-19
Identity = 54/173 (31.21%), Postives = 83/173 (47.98%), Query Frame = 2
Query:  113 TFNSATVAVVGDGFLARDITFQNTAGPSKH----QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYE 619
            T  SAT+ V    FLA ++   NT+   K     QA+A+R+  D +AFY C    +QDTL       F+ +C I GT DFIFG  A+++    +HA     +   ++ A  R    +  G     C++      +        YLGR W  + + V   +++S V+NP+GW E
Sbjct:  140 TVESATLIVWATNFLAANLNIINTSPMPKPGTQGQALAMRINGDKAAFYNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA---VGDGLRVIAAHNRQSTTEQNGYSFVHCKVTGVGTGI--------YLGRAWMSHPKVVYSYTEMSSVVNPSGWQE 301          
BLAST of CF832327 vs. ExPASy Swiss-Prot
Match: PME63_ARATH (Putative pectinesterase 63 OS=Arabidopsis thaliana GN=PME63 PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 6.149e-18
Identity = 53/174 (30.46%), Postives = 89/174 (51.15%), Query Frame = 2
Query:  113 TFNSATVAVVGDGFLARDITFQNTA----GPSKH-QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYE 619
            T +SAT+ V+ D F+A +I  +N+A    G  K  QA+++R+  + +AFY C    YQDT+   +   F+  C I GT DFIFG+  +++    ++      +   ++TA       + +G     C++  T   +        YLGR W  + + V   +D+S V+NP+GW E
Sbjct:  116 TVDSATLIVLSDYFMAVNIILKNSAPMPDGKRKGAQALSMRISGNKAAFYNCKFYGYQDTICDDTGNHFFKDCYIEGTFDFIFGSGRSLYLGTQLNV---VGDGIRVITAHAGKSAAEKSGYSFVHCKVTGTGTGI--------YLGRSWMSHPKVVYAYTDMSSVVNPSGWQE 278          
BLAST of CF832327 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 48/174 (27.59%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  113 TFNSATVAVVGDGFLARDITFQNTA----GPSKH-QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYE 619
            T +SA++ ++ D F+A +I  +NTA    G +K  QA+++R+  + +AFY C    +QDT+   +   F+  C + GT DFIFG+  +++    +H      +   ++ A       + +G     C++  T   +        YLGR W  + + V   ++++ V+NP GW E
Sbjct:  139 TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTGGGI--------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQE 301          
BLAST of CF832327 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 2.337e-17
Identity = 48/174 (27.59%), Postives = 88/174 (50.57%), Query Frame = 2
Query:  113 TFNSATVAVVGDGFLARDITFQNTA----GPSKH-QAVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYE 619
            T +SA++ ++ D F+A +I  +NTA    G +K  QA+++R+  + +AFY C    +QDT+   +   F+  C + GT DFIFG+  +++    +H      +   ++ A       + +G     C++  T   +        YLGR W  + + V   ++++ V+NP GW E
Sbjct:  139 TVDSASLIILSDYFMAVNIVVKNTAPAPDGKTKGAQALSMRISGNFAAFYNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTGGGI--------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQE 301          
BLAST of CF832327 vs. ExPASy Swiss-Prot
Match: PME66_ARATH (Probable pectinesterase 66 OS=Arabidopsis thaliana GN=PME66 PE=2 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 5.205e-17
Identity = 65/216 (30.09%), Postives = 91/216 (42.13%), Query Frame = 2
Query:    2 YREPVEVPKKKINLMFXXXXXXXXXXXXSRNVVDGSTTFNSATVAVVGDGFLARDITFQNTAG--PSKHQ----AVALRVGSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHAR---RPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEW 622
            YRE V +PK+K  +                   D   T  SAT     D  +   ITF+NT    P+  +    AVA R+  D         +  QDTL+    R +Y  CII+G +DFIFG   ++F+ C ++         N    +TA  R  P+   G V   C          V G  +T LGR W   +R +  +S +SDV+ P GW  W
Sbjct:   72 YREKVTIPKEKGFIYLQGKGIEQTVIEYD----DHQATDISATFTAFADDIVISGITFKNTYNIVPNNKREIVPAVAARMLGDRYVVTDSSFVGLQDTLFDGKGRHYYKRCIISGGIDFIFGYGQSLFKECTLNMTLGIYAPDNPYGTITAHQRPSPSDEGGFVFSDC---------TVTGVGKTLLGRAWGSNARVIFDRSRLSDVVLPIGWDAW 274          
BLAST of CF832327 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 62/171 (36.26%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  101 DGST--TFNSATVAVVGDGFLARDITFQNT----AGPSKH----------QAVALRV--GSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARR----PNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPW 547
            DGS   T  S+T+ +    F A+ +T +N     A  +K           QAVAL V    D + F    ++ YQDTLYV   R F++ C I+GTVDFIFG+  A+F NCD+ +R      + N    +TA    + NQ  G+VI   R+   SD +  K      LGRPW
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAK---SYGLGRPW 269          
BLAST of CF832327 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 8.310e-15
Identity = 62/171 (36.26%), Postives = 85/171 (49.71%), Query Frame = 2
Query:  101 DGST--TFNSATVAVVGDGFLARDITFQNT----AGPSKH----------QAVALRV--GSDLSAFYRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARR----PNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPW 547
            DGS   T  S+T+ +    F A+ +T +N     A  +K           QAVAL V    D + F    ++ YQDTLYV   R F++ C I+GTVDFIFG+  A+F NCD+ +R      + N    +TA    + NQ  G+VI   R+   SD +  K      LGRPW
Sbjct:  103 DGSKWGTAGSSTITISAKDFSAQSLTIRNDFDFPANQAKSDSDSSKIKDTQAVALYVTKSGDRAYFKDVSLVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAK---SYGLGRPW 269          
The following BLAST results are available for this feature:
BLAST of CF832327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 87
Match NameE-valueIdentityDescription
PME49_ARATH5.561e-1931.21Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME63_ARATH6.149e-1830.46Putative pectinesterase 63 OS=Arabidopsis thaliana... [more]
PPME1_ARATH2.337e-1727.59Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME48_ARATH2.337e-1727.59Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PME66_ARATH5.205e-1730.09Probable pectinesterase 66 OS=Arabidopsis thaliana... [more]
PMEA_ERWCH8.310e-1536.26Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]
PMEA_DICD38.310e-1536.26Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L01_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832327 ID=CF832327; Name=CF832327; organism=Citrus sinensis; type=EST; length=646bp
GTACAGAGAACCTGTTGAGGTGCCGAAGAAGAAAATTAATCTTATGTTTA
TTGGAGATGGGAGGACTACTACAATAATCACCGGTAGCAGGAATGTGGTT
GATGGCAGCACTACATTCAACTCTGCAACTGTTGCTGTGGTAGGGGACGG
ATTCTTGGCCAGAGACATAACATTTCAAAACACGGCGGGTCCGTCAAAAC
ATCAAGCCGTGGCACTGAGAGTAGGATCAGATTTATCAGCATTCTATAGG
TGTGACATGCTAGCATACCAAGACACTCTCTATGTACACTCACTTCGCCA
ATTTTATACCAGCTGCATTATAGCAGGCACAGTGGACTTCATTTTCGGAA
ATGCAGCAGCTGTGTTCCAAAACTGTGACATCCATGCTCGCCGCCCCAAT
CCAAACCAAAGGAACATGGTCACGGCACAAGGCCGCGACGACCCGAATCA
GAACACAGGCATAGTGATACAAAAATGCAGGATTGGTGCAACATCAGATT
TACTTGCTGTAAAGGGCAGCTTTGAGACATATTTAGGCAGGCCATGGAAG
CGGTACTCGAGGACTGTTGTGATGCAATCTGATATAAGTGATGTTATTAA
CCCAGCTGGGTGGTATGAATGGAGTGGGAATTTTGCATTGGACACA
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