CF832328

Overview
NameCF832328
Unique NameCF832328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:974..1810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME4_ARATH (Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 PE=2 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.034e-40
Identity = 84/194 (43.30%), Postives = 114/194 (58.76%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRD-DPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            + C    YQDTLYV++ RQFY +C+++GTVDFIFG +A V QN  I  R+ +  Q N VTA G +       GIV+Q CRI     L   + +  TYLGRPWK++S TV+M +++ D+I P GW  W G     +  Y EY N G GA  + RV W+  KV  SAAE   +TAAN++    W+     P ++GL
Sbjct:  397 FNCRFDGYQDTLYVNNGRQFYRNCVVSGTVDFIFGKSATVIQNTLIVVRKGSKGQYNTVTADGNELGLGMKIGIVLQNCRIVPDRKLTPERLTVATYLGRPWKKFSTTVIMSTEMGDLIRPEGWKIWDGESFHKSCRYVEYNNRGPGAFANRRVNWA--KVARSAAEVNGFTAANWLGPINWIQEANVPVTIGL 588          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME_BRACM (Pectinesterase/pectinesterase inhibitor (Fragment) OS=Brassica campestris PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.435e-37
Identity = 81/194 (41.75%), Postives = 115/194 (59.28%), Query Frame = -1
Query:  259 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQ-NTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPFSLGL 837
            + C    YQDTLYV++ RQFY + +++GTVDFI G +A V QN  I  R+ +P Q N VTA G+        GIV+  CRI A  +L A + + ++YLGRPWK ++ T V+ ++I D+I P GW EW G     T  Y E+ N G GA+ + RV W+  K+  SAAE + +T AN++  + W+        LGL
Sbjct:  380 FNCRFDGYQDTLYVNNGRQFYRNIVVSGTVDFINGKSATVIQNSLILCRKGSPGQTNHVTADGKQKGKAVKIGIVLHNCRIMADKELEADRLTVKSYLGRPWKPFATTAVIGTEIGDLIQPTGWNEWQGEKFHLTATYVEFNNRGPGANPAARVPWA--KMAKSAAEVERFTVANWLTPANWIQEANVTVQLGL 571          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME56_ARATH (Probable pectinesterase 56 OS=Arabidopsis thaliana GN=PME56 PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 4.615e-36
Identity = 71/123 (57.72%), Postives = 88/123 (71.54%), Query Frame = -1
Query:  469 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGW 837
            YRC + AYQDTLY +S RQFY  C I GTVDFIFG AAAVFQ C I AR+P   Q N++TAQ R++    +G   QKC I A+SDL  +KG+ +T+LGRPW+ +SR V M+S I DVI+ AGW
Sbjct:  164 YRCRIDAYQDTLYAYSGRQFYRDCYITGTVDFIFGRAAAVFQYCQIEARKPGIGQTNILTAQSREEDTATSGFSFQKCNISASSDLTPIKGTVKTFLGRPWRAFSRVVFMESFIDDVIDRAGW 286          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME53_ARATH (Probable pectinesterase 53 OS=Arabidopsis thaliana GN=PME53 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 8.430e-30
Identity = 71/182 (39.01%), Postives = 101/182 (55.49%), Query Frame = -1
Query:  292 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 837
            + C ML  QDTLY H  R +Y  C I G+VDFIFGNA ++++ C +HA     ++   VTAQGR    ++TG    KC++  T  L         YLGR W  +SR V   + + ++I P GWY W       T+FY +Y+ TGAGA+   RV W+  + +T   EA+ + +  FI GS W+
Sbjct:  215 FGCRMLGAQDTLYDHLGRHYYKDCYIEGSVDFIFGNALSLYEGCHVHAIA---DKLGAVTAQGRSSVLEDTGFSFVKCKVTGTGVL---------YLGRAWGPFSRVVFAYTYMDNIILPRGWYNWGDPSREMTVFYGQYKCTGAGANYGGRVAWA--RELTD-EEAKPFLSLTFIDGSEWI 381          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME11_ARATH (Putative pectinesterase 11 OS=Arabidopsis thaliana GN=PME11 PE=2 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.346e-27
Identity = 64/182 (35.16%), Postives = 96/182 (52.75%), Query Frame = -1
Query:  292 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 837
            Y C + +YQDTL   +   ++ +C I G  DFI G+A+++++ C +H+  PN      +TAQ R    + +G     C++          GS  T+LGRPW  YSR V   S  S+V+ P GW +W  +   +T++Y EY+  G GAD   RV+WS      S  EA  + + +FI G  WL
Sbjct:  166 YGCVITSYQDTLLDDNGNHYFKNCYIEGATDFICGSASSLYERCHLHSLSPN---NGSITAQMRTSATEKSGFTFLGCKL---------TGSGSTFLGRPWGAYSRVVFAYSFFSNVVAPQGWNQWGDSTKENTVYYGEYKCYGPGADREQRVEWSK---QLSDEEATVFLSKDFIGGKDWL 332          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME62_ARATH (Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT1 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.260e-25
Identity = 65/182 (35.71%), Postives = 89/182 (48.90%), Query Frame = -1
Query:  292 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 837
            YR  +L  QDTL+  +   ++  C I G VDFIFGNA +++Q+CDIH+      +   + A  RD   ++TG     C I  T  +         YLGR W  YSRTV     I+D+I P GW +W        + + EY   G GA+   RV WS  K +T   E + +    FI G  WL
Sbjct:  212 YRVRVLGSQDTLFDDNGSHYFYQCYIQGNVDFIFGNAKSLYQDCDIHS---TAKRYGAIAAHHRDSETEDTGFSFVNCDISGTGQI---------YLGRAWGNYSRTVYSNCFIADIITPVGWSDWKHPERQRKVMFGEYNCRGRGAERGGRVPWS--KTLT-RDEVKPFLGREFIYGDQWL 378          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME10_ARATH (Putative pectinesterase 10 OS=Arabidopsis thaliana GN=PME10 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 1.260e-25
Identity = 68/185 (36.76%), Postives = 87/185 (47.03%), Query Frame = -1
Query:  271 YQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHAR---RPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGSTGFPF 816
            +QDTLY    R +Y  C+I+G +DFIFG A ++F+ C +  R    P       +TAQGRD P    G V + C          V GS +  LGR WK YSR +  +S  SD I P GW  W        + + E+  TG GADTS RV W T     S  +   +T   FI    WL      F
Sbjct:  167 FQDTLYDDYGRHYYKRCVISGGIDFIFGGAQSIFEGCTLKLRVGIYPPNEVYGTITAQGRDSPTDKGGFVFKDC---------TVMGSGKALLGRAWKSYSRVIFYRSMFSDNILPIGWDAWKAKGQEGHITFVEFGCTGVGADTSKRVPWLT---KASEKDVLQFTNLTFIDEEGWLSRLPIKF 339          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME52_ARATH (Putative pectinesterase 52 OS=Arabidopsis thaliana GN=PME52 PE=2 SV=2)

HSP 1 Score: 112.464 bits (280), Expect = 3.103e-24
Identity = 62/187 (33.16%), Postives = 97/187 (51.87%), Query Frame = -1
Query:  286 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARR---PNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWLGS 837
            Y CD L  QDT++ +  R  + +C I G +DFIFG+  +V+++C I+A      +      +TAQGR   +  +G V  +          +V GS   YLGR +  +SR + +Q+D+S V++P GWY W       +  YAE +  GAG+D S RV W     + S    Q ++ +NFI    W+ +
Sbjct:  114 YNCDFLGLQDTVWDNLGRHHFKNCYIEGAIDFIFGSGQSVYEDCHINATAGALASKVSFGYITAQGRSSDSDPSGFVFLRG---------SVSGSTSVYLGRAYGPFSRVIFIQTDLSSVVHPEGWYSWHYGGYEMSFTYAEVECKGAGSDMSRRVPW--IDKLHSFYTKQQFSISNFIDQDQWISN 289          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME14_ARATH (Putative pectinesterase 14 OS=Arabidopsis thaliana GN=PME14 PE=2 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 3.431e-23
Identity = 60/182 (32.97%), Postives = 92/182 (50.55%), Query Frame = -1
Query:  292 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 837
            Y C     QDTL     R F+  C I G++DFIFGN  +++++C +H+     N    +TA G+D     TG V   C+I          GS   +LGR W+ Y+R +  ++ +S V++  GW +        T++Y E++  G GA+ S RV   T+  + S  EA  +T  +FI G  WL
Sbjct:  165 YGCGFYGNQDTLLDQEGRHFFKGCFIEGSIDFIFGNGRSLYEDCTLHS-IAKENTIGCITANGKDTLKDRTGFVFVNCKI---------TGSARVWLGRAWRPYARVIFSKTYMSRVVSLDGWNDMGDPKTQRTVYYGEHRCYGPGANHSKRV---TYAKLLSDVEAAPFTNISFIDGEEWL 333          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME8_ARATH (Probable pectinesterase 8 OS=Arabidopsis thaliana GN=PME8 PE=2 SV=2)

HSP 1 Score: 108.612 bits (270), Expect = 4.480e-23
Identity = 65/187 (34.76%), Postives = 94/187 (50.27%), Query Frame = -1
Query:  292 CDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDI--HARRPNPNQRNM---VTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAAN--FIAGSTWL 831
            C     QDTL+    R ++  C I G++DFIFGNA +++Q+C I   A + +P  + +   VTA GR   ++N+G     C IG T  +         +LGR W+ YSR V + + ++DVI P GW  ++      T+FY EY  +G GAD S R  +     +    E Q     N  FI G  WL
Sbjct:  216 CGFFGAQDTLHDDRGRHYFKDCYIQGSIDFIFGNAKSLYQDCRIISMANQLSPGSKAVNGAVTANGRSSKDENSGFSFVNCTIGGTGHV---------WLGRAWRPYSRVVFVSTTMTDVIAPEGWNNFNDPSRDATIFYGEYNCSGPGADMSKRAPY-----VQKLNETQVALLINTSFIDGDQWL 388          
The following BLAST results are available for this feature:
BLAST of CF832328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PME4_ARATH4.034e-4043.30Pectinesterase 4 OS=Arabidopsis thaliana GN=PME4 P... [more]
PME_BRACM1.435e-3741.75Pectinesterase/pectinesterase inhibitor (Fragment)... [more]
PME56_ARATH4.615e-3657.72Probable pectinesterase 56 OS=Arabidopsis thaliana... [more]
PME53_ARATH8.430e-3039.01Probable pectinesterase 53 OS=Arabidopsis thaliana... [more]
PME11_ARATH1.346e-2735.16Putative pectinesterase 11 OS=Arabidopsis thaliana... [more]
PME62_ARATH1.260e-2535.71Pectinesterase QRT1 OS=Arabidopsis thaliana GN=QRT... [more]
PME10_ARATH1.260e-2536.76Putative pectinesterase 10 OS=Arabidopsis thaliana... [more]
PME52_ARATH3.103e-2433.16Putative pectinesterase 52 OS=Arabidopsis thaliana... [more]
PME14_ARATH3.431e-2332.97Putative pectinesterase 14 OS=Arabidopsis thaliana... [more]
PME8_ARATH4.480e-2334.76Probable pectinesterase 8 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832328 ID=CF832328; Name=CF832328; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTTTTAAGCTCAATCAGCAGTAGTACTTTAATTTCAGGGAG
CAACGCATGCAATCATCATCCATAATTCCCTGCTGAGATAAATCTCTTAC
ATCAAACTCGAGCAGACTCACACAAATAAAATCATCAAACTTGAGCAGAC
TCGCACAAATAAAATCATCAAACATCTAGCGGAGCAAGTGTTATTTATTG
CTAGCTAGGACATTTATAGGCAGCTGAGCTTAGCTATGGCCTATGTATGA
CAAATTCACAGACCAAGAGAGAAAGGAAACCCAGTGGAGCCAAGCCAAGT
ACTCCCTGCAATAAAATTCGCAGCTGTATAAGTTTGAGCCTCAGCTGCAC
TAGTAATCACCTTGAATGTGCTCCATTTCACCCTATTCGATGTGTCAGCA
CCAGCACCTGTGTTTTGATACTCTGCATAAAACAATGTGTCCAATGCAAA
ATTCCCACTCCATTCATACCACCCAGCTGGGTTAATAACATCACTTATAT
CAGATTGCATCACAACAGTCCTCGAGTACCGCTTCCATGGCCTGCCTAAA
TATGTCTCAAAGCTGCCCTTTACAGCAAGTAAATCTGATGTTGCACCAAT
CCTGCATTTTTGTATCACTATGCCTGTGTTCTGATTCGGGTCGTCGCGGC
CTTGTGCCGTGACCATGTTCCTTTGGTTTGGATTGGGGCGGCGAGCATGG
ATGTCACAGTTTTGGAACACAGCTGCTGCATTTCCGAAAATGAAGTCCAC
TGTGCCTGCTATAATGCAGCTGGTATAAAATTGGCGAAGTGAGTGTACAT
AGAGAGTGTCTTGGTATGCTAGCATGTCACACCTATA
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