CF832328

Overview
NameCF832328
Unique NameCF832328
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length837
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig3965 contig Csv1_Contig3965:974..1810. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME49_ARATH (Probable pectinesterase 49 OS=Arabidopsis thaliana GN=PME49 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.813e-17
Identity = 53/182 (29.12%), Postives = 80/182 (43.96%), Query Frame = -1
Query:  292 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 837
            Y C    +QDTL       F+ +C I GT DFIFG  A+++    +HA     +   ++ A  R    +  G     C++      +        YLGR W  + + V   +++S V+NP+GW E        T+FY EY  TG G+  + RV  +         EA  +    +I GS WL
Sbjct:  188 YNCRFYGFQDTLCDDRGNHFFKNCYIEGTYDFIFGRGASLYLTTQLHA---VGDGLRVIAAHNRQSTTEQNGYSFVHCKVTGVGTGI--------YLGRAWMSHPKVVYSYTEMSSVVNPSGWQENRVRAHDKTVFYGEYMCTGPGSHKAKRVAHTQ---DIDNKEASQFLTLGYIKGSKWL 355          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME68_ARATH (Probable pectinesterase 68 OS=Arabidopsis thaliana GN=PME68 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.062e-16
Identity = 50/181 (27.62%), Postives = 82/181 (45.30%), Query Frame = -1
Query:  292 CDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWS-GNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 831
            C     QDTL   + R ++  C I G++DFIFGN  +++++C++H+     ++   + A GR  P + TG     CR+  T  L         Y+GR   +YSR V   +    ++   GW +W   +    T F+  Y   G GA  +  V W+          A  + A +F+ G  W+
Sbjct:  192 CGFYGAQDTLCDDAGRHYFKECYIEGSIDFIFGNGRSMYKDCELHS---IASRFGSIAAHGRTCPEEKTGFAFVGCRVTGTGPL---------YVGRAMGQYSRIVYAYTYFDALVAHGGWDDWDHKSNKSKTAFFGVYNCYGPGAAATRGVSWAR---ALDYESAHPFIAKSFVNGRHWI 357          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PPME1_ARATH (Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PPME1 PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 48/182 (26.37%), Postives = 81/182 (44.51%), Query Frame = -1
Query:  292 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 837
            Y C    +QDT+   +   F+  C + GT DFIFG+  +++    +H      +   ++ A       + +G     C++  T   +        YLGR W  + + V   ++++ V+NP GW E        T+FY EY+ +G G+  + RV    F       EA  + +  +I GS WL
Sbjct:  188 YNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTGGGI--------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRV---PFTQDIDDKEANRFLSLGYIQGSKWL 355          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PME48_ARATH (Probable pectinesterase 48 OS=Arabidopsis thaliana GN=PME48 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 6.928e-16
Identity = 48/182 (26.37%), Postives = 81/182 (44.51%), Query Frame = -1
Query:  292 YRCDMLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARRPNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWKRYSRTVVMQSDISDVINPAGWYEWSGNFALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGSTWL 837
            Y C    +QDT+   +   F+  C + GT DFIFG+  +++    +H      +   ++ A       + +G     C++  T   +        YLGR W  + + V   ++++ V+NP GW E        T+FY EY+ +G G+  + RV    F       EA  + +  +I GS WL
Sbjct:  188 YNCKFYGFQDTICDDTGNHFFKDCYVEGTFDFIFGSGTSMYLGTQLHV---VGDGIRVIAAHAGKSAEEKSGYSFVHCKVTGTGGGI--------YLGRAWMSHPKVVYAYTEMTSVVNPTGWQENKTPAHDKTVFYGEYKCSGPGSHKAKRV---PFTQDIDDKEANCFLSLGYIQGSKWL 355          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PMEA_DICD3 (Pectinesterase A OS=Dickeya dadantii (strain 3937) GN=pemA PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.887e-13
Identity = 65/202 (32.18%), Postives = 95/202 (47.03%), Query Frame = -1
Query:  298 MLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARR----PNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWK--------RYS------RTVVMQSDISDVINPAGWYEWSGN--------FALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 825
            ++ YQDTLYV   R F++ C I+GTVDFIFG+  A+F NCD+ +R      + N    +TA    + NQ  G+VI   R+   SD +  K      LGRPW         RY+      +TV + + + + I   GW + SG         F  +   + EY++ GAGA  S   +  T       A+A  YT +  +   T
Sbjct:  173 LVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAK---SYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGATVSKDRRQLT------DAQAAEYTQSKVLGDWT 362          
BLAST of CF832328 vs. ExPASy Swiss-Prot
Match: PMEA_ERWCH (Pectinesterase A OS=Erwinia chrysanthemi GN=pemA PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.464e-13
Identity = 65/202 (32.18%), Postives = 95/202 (47.03%), Query Frame = -1
Query:  298 MLAYQDTLYVHSLRQFYTSCIIAGTVDFIFGNAAAVFQNCDIHARR----PNPNQRNMVTAQGRDDPNQNTGIVIQKCRIGATSDLLAVKGSFETYLGRPWK--------RYS------RTVVMQSDISDVINPAGWYEWSGN--------FALDTLFYAEYQNTGAGADTSNRVKWSTFKVITSAAEAQTYTAANFIAGST 825
            ++ YQDTLYV   R F++ C I+GTVDFIFG+  A+F NCD+ +R      + N    +TA    + NQ  G+VI   R+   SD +  K      LGRPW         RY+      +TV + + + + I   GW + SG         F  +   + EY++ GAGA  S   +  T       A+A  YT +  +   T
Sbjct:  173 LVGYQDTLYVSGGRSFFSDCRISGTVDFIFGDGTALFNNCDLVSRYRADVKSGNVSGYLTAPS-TNINQKYGLVITNSRVIRESDSVPAK---SYGLGRPWHPTTTFSDGRYADPNAIGQTVFLNTSMDNHI--YGWDKMSGKDKNGNTIWFNPEDSRFFEYKSYGAGAAVSKDRRQLT------DAQAAEYTQSKVLGDWT 362          
The following BLAST results are available for this feature:
BLAST of CF832328 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 86
Match NameE-valueIdentityDescription
PME49_ARATH2.813e-1729.12Probable pectinesterase 49 OS=Arabidopsis thaliana... [more]
PME68_ARATH4.062e-1627.62Probable pectinesterase 68 OS=Arabidopsis thaliana... [more]
PPME1_ARATH6.928e-1626.37Pectinesterase PPME1 OS=Arabidopsis thaliana GN=PP... [more]
PME48_ARATH6.928e-1626.37Probable pectinesterase 48 OS=Arabidopsis thaliana... [more]
PMEA_DICD31.887e-1332.18Pectinesterase A OS=Dickeya dadantii (strain 3937)... [more]
PMEA_ERWCH2.464e-1332.18Pectinesterase A OS=Erwinia chrysanthemi GN=pemA P... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832328 ID=CF832328; Name=CF832328; organism=Citrus sinensis; type=EST; length=837bp
TTTTTTTTTTTTTTAAGCTCAATCAGCAGTAGTACTTTAATTTCAGGGAG
CAACGCATGCAATCATCATCCATAATTCCCTGCTGAGATAAATCTCTTAC
ATCAAACTCGAGCAGACTCACACAAATAAAATCATCAAACTTGAGCAGAC
TCGCACAAATAAAATCATCAAACATCTAGCGGAGCAAGTGTTATTTATTG
CTAGCTAGGACATTTATAGGCAGCTGAGCTTAGCTATGGCCTATGTATGA
CAAATTCACAGACCAAGAGAGAAAGGAAACCCAGTGGAGCCAAGCCAAGT
ACTCCCTGCAATAAAATTCGCAGCTGTATAAGTTTGAGCCTCAGCTGCAC
TAGTAATCACCTTGAATGTGCTCCATTTCACCCTATTCGATGTGTCAGCA
CCAGCACCTGTGTTTTGATACTCTGCATAAAACAATGTGTCCAATGCAAA
ATTCCCACTCCATTCATACCACCCAGCTGGGTTAATAACATCACTTATAT
CAGATTGCATCACAACAGTCCTCGAGTACCGCTTCCATGGCCTGCCTAAA
TATGTCTCAAAGCTGCCCTTTACAGCAAGTAAATCTGATGTTGCACCAAT
CCTGCATTTTTGTATCACTATGCCTGTGTTCTGATTCGGGTCGTCGCGGC
CTTGTGCCGTGACCATGTTCCTTTGGTTTGGATTGGGGCGGCGAGCATGG
ATGTCACAGTTTTGGAACACAGCTGCTGCATTTCCGAAAATGAAGTCCAC
TGTGCCTGCTATAATGCAGCTGGTATAAAATTGGCGAAGTGAGTGTACAT
AGAGAGTGTCTTGGTATGCTAGCATGTCACACCTATA
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