CF832332

Overview
NameCF832332
Unique NameCF832332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 5.983e-32
Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 2
Query:   35 PSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            P+     V LF +W+ + V V+DI L DYI V+  K A Y+PH+AGR+ ++RF KA CPIVERL NSLMMHGRNNG KLM V IV HA EII+LLT  NP+QV+ +AVIN GPR
Sbjct:   16 PATEAPEVALFGKWSLQSVNVSDISLVDYIPVKE-KSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPR 128          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 2.274e-31
Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF RW   D+ ++DI L DYI V+  K A Y+PH+AGRY+ KRF KAQCPIVERLT+ LMM GR+NG KL+A  IV HA EIIHLLT  NP+QV  +A++N GPR
Sbjct:   43 IKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPR 148          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3)

HSP 1 Score: 133.65 bits (335), Expect = 2.970e-31
Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF +W+F++V+V D  L DY+ VR      +V HTAGRY+ KRF KAQCPI+ERLTNSLMM+GRNNG KL AV I+ H L+II++LTD NPIQV+ DA+ N GPR
Sbjct:   40 IKLFNKWSFEEVEVKDASLVDYVQVR---QPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPR 143          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1)

HSP 1 Score: 124.79 bits (312), Expect = 1.379e-28
Identity = 62/72 (86.11%), Postives = 63/72 (87.50%), Query Frame = 2
Query:  161 HTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            HTAGRY  KRF KAQCPIVERLTNSLMMHGRNNG KLMAV IV HA+EIIHLLTD NPIQVI DAVIN GPR
Sbjct:    1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPR 72          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 7.569e-27
Identity = 62/107 (57.94%), Postives = 76/107 (71.03%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            V LF +W++  V   DI L DYI V   K   + PH+AGRY+  RF KAQCPIVERL NS+MM GRN G K+MAV I+  A EII+LLTD NP+QV+ +AV+N GPR
Sbjct:    5 VALFGKWSYSGVTCPDISLQDYICV---KKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPR 108          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.686e-26
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            ++ LF ++ F+ V+V DI L DYI +   +    +PHTAGR+  KRF KA+C IVERLTNSLMM+GRNNG KL+A  IV HA EII LLTD NP+QV+ DAV   GPR
Sbjct:   17 HIKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPR 121          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.686e-26
Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            ++ LF ++ F+ V+V DI L DYI +   +    +PHTAGR+  KRF KA+C IVERLTNSLMM+GRNNG KL+A  IV HA EII LLTD NP+QV+ DAV   GPR
Sbjct:   17 SIKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPR 121          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 4.023e-20
Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + +F RW+ KDV V D  L +YI +       YVPHTAGRY+ ++F KA+  IVERL N +M    N G KL A+ IV +A EII   T  NPIQV+ DA+ N GPR
Sbjct:    6 IKVFGRWSTKDVVVKDPGLRNYINLTPI----YVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPR 108          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.690e-18
Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            V LF +W+F++V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN G K  A  IV  A +II+  T  NPIQV+ DA+IN  PR
Sbjct:   40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPR 142          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 2
Query:   50 YNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            Y + +F +W   +V+V D  L DYI ++      Y+PHT GR++ KRF KA+ PIVERL N +M   +N G K +A  IV  A +IIH  T  NPIQV+  A+ N  PR
Sbjct:   11 YEMKVFGKWDPTEVEVRDPGLKDYICLKPM----YLPHTGGRHAKKRFAKAEVPIVERLINRVMRTEKNTGKKHLAYNIVKRAFDIIHERTGENPIQVLVQALENAAPR 115          
The following BLAST results are available for this feature:
BLAST of CF832332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS5_CAEEL5.983e-3260.5340S ribosomal protein S5 OS=Caenorhabditis elegans... [more]
RS5B_DROME2.274e-3160.7540S ribosomal protein S5b OS=Drosophila melanogast... [more]
RS5_YEAST2.970e-3160.7540S ribosomal protein S5 OS=Saccharomyces cerevisi... [more]
RS5_NICPL1.379e-2886.1140S ribosomal protein S5 (Fragment) OS=Nicotiana p... [more]
RS5_DICDI7.569e-2757.9440S ribosomal protein S5 OS=Dictyostelium discoide... [more]
RS5B_SCHPO1.686e-2658.3340S ribosomal protein S5-B OS=Schizosaccharomyces ... [more]
RS5A_SCHPO1.686e-2658.3340S ribosomal protein S5-A OS=Schizosaccharomyces ... [more]
RS7_METJA4.023e-2049.5330S ribosomal protein S7P OS=Methanocaldococcus ja... [more]
RS7_PYRIL1.690e-1848.6030S ribosomal protein S7P OS=Pyrobaculum islandicu... [more]
RS7_METKA2.883e-1844.9530S ribosomal protein S7P OS=Methanopyrus kandleri... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832332 ID=CF832332; Name=CF832332; organism=Citrus sinensis; type=EST; length=377bp
AATGGCGACTGCTGTACTGGCACTGTCTCAAGACCCATCGCCCCCTCGCT
ACAATGTGAACCTCTTCATTAGGTGGACTTTCAAGGATGTTCAGGTCAAT
GACATCTAGTTGAATGATTATATTGGCGTGCGAGCGGCCAAGCACGCTAC
TTATGTGCCTCACACTGCTGGGAGGTACTCTATTAAGCGTTTCCCGAAGG
CCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGT
CGAAACAACGGCTACAAATTGATGGCTGTCACGATTGTTAACCATGCCTT
GGAGATCATTCACCTTTTGACCGACCACAACCCAATTCAAGTCATTGGTG
ATGCTGTCATCAACAGGGGTCCAAGGG
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