CF832332
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_CAEEL (40S ribosomal protein S5 OS=Caenorhabditis elegans GN=rps-5 PE=1 SV=1) HSP 1 Score: 135.961 bits (341), Expect = 5.983e-32 Identity = 69/114 (60.53%), Postives = 84/114 (73.68%), Query Frame = 2 Query: 35 PSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 P+ V LF +W+ + V V+DI L DYI V+ K A Y+PH+AGR+ ++RF KA CPIVERL NSLMMHGRNNG KLM V IV HA EII+LLT NP+QV+ +AVIN GPR Sbjct: 16 PATEAPEVALFGKWSLQSVNVSDISLVDYIPVKE-KSAKYLPHSAGRFQVRRFRKAACPIVERLANSLMMHGRNNGKKLMTVRIVKHAFEIIYLLTGENPVQVLVNAVINSGPR 128
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5B_DROME (40S ribosomal protein S5b OS=Drosophila melanogaster GN=RpS5b PE=2 SV=1) HSP 1 Score: 134.035 bits (336), Expect = 2.274e-31 Identity = 65/107 (60.75%), Postives = 80/107 (74.77%), Query Frame = 2 Query: 56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 + LF RW D+ ++DI L DYI V+ K A Y+PH+AGRY+ KRF KAQCPIVERLT+ LMM GR+NG KL+A IV HA EIIHLLT NP+QV +A++N GPR Sbjct: 43 IKLFGRWACDDISISDISLQDYIAVKE-KFARYLPHSAGRYAAKRFRKAQCPIVERLTSGLMMKGRSNGKKLLACRIVKHAFEIIHLLTSENPLQVTVNAIVNSGPR 148
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_YEAST (40S ribosomal protein S5 OS=Saccharomyces cerevisiae GN=RPS5 PE=1 SV=3) HSP 1 Score: 133.65 bits (335), Expect = 2.970e-31 Identity = 65/107 (60.75%), Postives = 82/107 (76.64%), Query Frame = 2 Query: 56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 + LF +W+F++V+V D L DY+ VR +V HTAGRY+ KRF KAQCPI+ERLTNSLMM+GRNNG KL AV I+ H L+II++LTD NPIQV+ DA+ N GPR Sbjct: 40 IKLFNKWSFEEVEVKDASLVDYVQVR---QPIFVAHTAGRYANKRFRKAQCPIIERLTNSLMMNGRNNGKKLKAVRIIKHTLDIINVLTDQNPIQVVVDAITNTGPR 143
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_NICPL (40S ribosomal protein S5 (Fragment) OS=Nicotiana plumbaginifolia GN=RPS5 PE=2 SV=1) HSP 1 Score: 124.79 bits (312), Expect = 1.379e-28 Identity = 62/72 (86.11%), Postives = 63/72 (87.50%), Query Frame = 2 Query: 161 HTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 HTAGRY KRF KAQCPIVERLTNSLMMHGRNNG KLMAV IV HA+EIIHLLTD NPIQVI DAVIN GPR Sbjct: 1 HTAGRYQAKRFRKAQCPIVERLTNSLMMHGRNNGKKLMAVRIVKHAMEIIHLLTDLNPIQVIVDAVINSGPR 72
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_DICDI (40S ribosomal protein S5 OS=Dictyostelium discoideum GN=rps5 PE=3 SV=1) HSP 1 Score: 119.013 bits (297), Expect = 7.569e-27 Identity = 62/107 (57.94%), Postives = 76/107 (71.03%), Query Frame = 2 Query: 56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 V LF +W++ V DI L DYI V K + PH+AGRY+ RF KAQCPIVERL NS+MM GRN G K+MAV I+ A EII+LLTD NP+QV+ +AV+N GPR Sbjct: 5 VALFGKWSYSGVTCPDISLQDYICV---KKNVFTPHSAGRYNKVRFRKAQCPIVERLANSMMMFGRNAGKKVMAVRIIEQAFEIIYLLTDKNPLQVLVEAVMNSGPR 108
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5B_SCHPO (40S ribosomal protein S5-B OS=Schizosaccharomyces pombe GN=rps5b PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.686e-26 Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 2 Query: 53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 ++ LF ++ F+ V+V DI L DYI + + +PHTAGR+ KRF KA+C IVERLTNSLMM+GRNNG KL+A IV HA EII LLTD NP+QV+ DAV GPR Sbjct: 17 HIKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPR 121
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5A_SCHPO (40S ribosomal protein S5-A OS=Schizosaccharomyces pombe GN=rps5a PE=2 SV=1) HSP 1 Score: 117.857 bits (294), Expect = 1.686e-26 Identity = 63/108 (58.33%), Postives = 78/108 (72.22%), Query Frame = 2 Query: 53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 ++ LF ++ F+ V+V DI L DYI + + +PHTAGR+ KRF KA+C IVERLTNSLMM+GRNNG KL+A IV HA EII LLTD NP+QV+ DAV GPR Sbjct: 17 SIKLFNKFPFEGVEVKDISLVDYITIGNGQP---LPHTAGRFQTKRFRKARCFIVERLTNSLMMNGRNNGKKLLATRIVKHAFEIIALLTDQNPLQVLVDAVAACGPR 121
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METJA (30S ribosomal protein S7P OS=Methanocaldococcus jannaschii GN=rps7p PE=3 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 4.023e-20 Identity = 53/107 (49.53%), Postives = 67/107 (62.62%), Query Frame = 2 Query: 56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 + +F RW+ KDV V D L +YI + YVPHTAGRY+ ++F KA+ IVERL N +M N G KL A+ IV +A EII T NPIQV+ DA+ N GPR Sbjct: 6 IKVFGRWSTKDVVVKDPGLRNYINLTPI----YVPHTAGRYTKRQFEKAKMNIVERLVNKVMRREENTGKKLKALKIVENAFEIIEKRTKQNPIQVLVDAIENAGPR 108
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_PYRIL (30S ribosomal protein S7P OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rps7p PE=3 SV=1) HSP 1 Score: 91.2781 bits (225), Expect = 1.690e-18 Identity = 52/107 (48.60%), Postives = 65/107 (60.75%), Query Frame = 2 Query: 56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 V LF +W+F++V V D L YI ++ +PHT GRY RF KA+ PIVERL N +M GRN G K A IV A +II+ T NPIQV+ DA+IN PR Sbjct: 40 VLLFGKWSFENVVVKDPGLRRYICLKPV----LLPHTEGRYQKHRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDIIYYKTGQNPIQVLVDAIINVAPR 142
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METKA (30S ribosomal protein S7P OS=Methanopyrus kandleri GN=rps7p PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.883e-18 Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 2 Query: 50 YNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376 Y + +F +W +V+V D L DYI ++ Y+PHT GR++ KRF KA+ PIVERL N +M +N G K +A IV A +IIH T NPIQV+ A+ N PR Sbjct: 11 YEMKVFGKWDPTEVEVRDPGLKDYICLKPM----YLPHTGGRHAKKRFAKAEVPIVERLINRVMRTEKNTGKKHLAYNIVKRAFDIIHERTGENPIQVLVQALENAAPR 115 The following BLAST results are available for this feature:
BLAST of CF832332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 57
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CF832332 ID=CF832332; Name=CF832332; organism=Citrus sinensis; type=EST; length=377bpback to top |