CF832332

Overview
NameCF832332
Unique NameCF832332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_PYRAE (30S ribosomal protein S7P OS=Pyrobaculum aerophilum GN=rps7p PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            LF +W+++DV V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN G K  A  IV  A ++I+  T  NP+QV  DA+IN  PR
Sbjct:   41 LFGKWSYEDVVVRDPGLRRYICLKPV----ILPHTEGRYQNTRFGKARIPIVERLINLMMRPGRNTGKKHKAYNIVKRAFDLIYYKTGKNPLQVFIDAIINTAPR 141          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_DESMO (30S ribosomal protein S7P OS=Desulfurococcus mobilis GN=rps7p PE=3 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 47/107 (43.93%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF +W++  ++V D  L  YI ++      Y+PHT GR+  +RF K   PIVERL N +M  GRN G K +A  IV  A +IIH+ T  NPIQV+  A+ N  PR
Sbjct:   14 IKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHTGGRHEHRRFGKTHVPIVERLINKVMRPGRNMGKKHLAYHIVKKAFDIIHIKTGENPIQVLVRAIENAAPR 116          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_AERPE (30S ribosomal protein S7P OS=Aeropyrum pernix GN=rps7p PE=3 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF +W++  V+V D  L  YI ++      ++PHT GR+  +RF KA+ PIVERL N LM  GRN G K +A  IV  A +II+  T  NPIQV+  A+ N  PR
Sbjct:   21 IRLFGKWSWVGVEVRDPSLKRYINLKPV----WLPHTGGRHEKRRFGKAEVPIVERLMNKLMRPGRNGGKKHLAYNIVKTAFDIIYFETGENPIQVLVKAIENSAPR 123          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_THENV (30S ribosomal protein S7P OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rps7p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 49/105 (46.67%), Postives = 63/105 (60.00%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            LF +W+F++V V D  L  YI ++       +PHT GRY   RF KA+ PIVERL N +M  GRN G K  A  IV  A +I++  T  NPIQV  DA++N  PR
Sbjct:   42 LFGKWSFENVVVRDPGLRRYICLKPV----VLPHTEGRYQNYRFGKARIPIVERLINLMMRPGRNAGKKHKAYNIVKRAFDIVYYKTGQNPIQVFIDAIVNTAPR 142          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_SULTO (30S ribosomal protein S7P OS=Sulfolobus tokodaii GN=rps7p PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.095e-17
Identity = 49/108 (45.37%), Postives = 67/108 (62.04%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            ++ +F +W  K V++ D  L  YIG+       Y+PHT GR+  +RF KA+ PIVERL N++M  GRN G K++A  IV  A +II L T  NPIQV+  A+ N  PR
Sbjct:   10 DLKVFGKWDTK-VEIRDPSLKKYIGLMPV----YLPHTGGRHEHRRFGKAKLPIVERLINNVMRPGRNKGKKMLAYNIVKTAFDIIALKTGQNPIQVLVKAIENSAPR 112          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_DESK1 (30S ribosomal protein S7P OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=rps7p PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.869e-17
Identity = 46/107 (42.99%), Postives = 66/107 (61.68%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF +W++  ++V D  L  YI ++      Y+PH+ GR+  KRF KA  PIVERL N++M  GRN G K +A  IV  + E+I+L T  NP+QV+  A+ N  PR
Sbjct:   14 IKLFNKWSYDFIEVRDPSLKKYICLKPV----YLPHSGGRHEHKRFGKALVPIVERLINNVMRPGRNMGKKHLAYNIVKKSFELIYLKTGENPLQVLVRAIENAAPR 116          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_SULAC (30S ribosomal protein S7P OS=Sulfolobus acidocaldarius GN=rps7p PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17
Identity = 49/108 (45.37%), Postives = 66/108 (61.11%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            NV +F +W  K V+V D  L  YI + +     Y+PHT GR+  +RF K++ PIVERL N+LM  GRN G K++A  IV    +II + T  NPIQV+  A+ N  PR
Sbjct:   11 NVKVFGKWDTK-VEVRDPSLKKYIDLMSI----YLPHTGGRHEHRRFGKSRIPIVERLINNLMRPGRNKGKKMLAYNIVKTTFDIIAVKTGQNPIQVLVRAIENAAPR 113          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_ENCCU (40S ribosomal protein S5 OS=Encephalitozoon cuniculi GN=RPS5 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.163e-17
Identity = 45/107 (42.06%), Postives = 66/107 (61.68%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            +NLF ++++++V+VN++ L  YI +        VPH A   +     KA+ PI ER   SLM HGRN+G K +A+ I   A  IIH +T  NP+QV+ DA++N GPR
Sbjct:   23 INLFEKYSYEEVKVNNVSLRPYINL---SRRGIVPHAATTITKGTTGKARIPIAERFVCSLMRHGRNSGKKRLAINIFEDACFIIHSMTKKNPLQVLVDAIVNSGPR 126          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_SULSO (30S ribosomal protein S7P OS=Sulfolobus solfataricus GN=rps7p PE=3 SV=3)

HSP 1 Score: 85.8853 bits (211), Expect = 7.101e-17
Identity = 48/108 (44.44%), Postives = 65/108 (60.19%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            ++ +F +W  K V++ D  L  YI +       Y+PHT GR+  +RF KA+ PIVERL N +M  GRN G K +A  IV  A +II+L T  NPIQV+  A+ N  PR
Sbjct:    9 DIKVFGKWDTK-VEIRDPSLKKYISLMPV----YLPHTGGRHEHRRFGKAKVPIVERLINQIMRPGRNKGKKHLAYNIVKLAFDIIYLKTGQNPIQVLVRAIENSAPR 111          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS5_ENTHI (40S ribosomal protein S5 (Fragment) OS=Entamoeba histolytica PE=2 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.524e-16
Identity = 39/65 (60.00%), Postives = 49/65 (75.38%), Query Frame = 2
Query:  182 IKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            IK F K QCPIVERL   +M HG+N+G KL+A+ +V  + EIIHLLT+ NPIQV+ DA+IN  PR
Sbjct:    2 IKPFRKIQCPIVERLVCCMMQHGKNSGKKLLAMRVVEESFEIIHLLTEKNPIQVLVDAIINASPR 66          
The following BLAST results are available for this feature:
BLAST of CF832332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS7_PYRAE6.422e-1846.6730S ribosomal protein S7P OS=Pyrobaculum aerophilu... [more]
RS7_DESMO6.422e-1843.9330S ribosomal protein S7P OS=Desulfurococcus mobil... [more]
RS7_AERPE6.422e-1844.8630S ribosomal protein S7P OS=Aeropyrum pernix GN=r... [more]
RS7_THENV1.095e-1746.6730S ribosomal protein S7P OS=Thermoproteus neutrop... [more]
RS7_SULTO1.095e-1745.3730S ribosomal protein S7P OS=Sulfolobus tokodaii G... [more]
RS7_DESK11.869e-1742.9930S ribosomal protein S7P OS=Desulfurococcus kamch... [more]
RS7_SULAC4.163e-1745.3730S ribosomal protein S7P OS=Sulfolobus acidocalda... [more]
RS5_ENCCU4.163e-1742.0640S ribosomal protein S5 OS=Encephalitozoon cunicu... [more]
RS7_SULSO7.101e-1744.4430S ribosomal protein S7P OS=Sulfolobus solfataric... [more]
RS5_ENTHI3.524e-1660.0040S ribosomal protein S5 (Fragment) OS=Entamoeba h... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832332 ID=CF832332; Name=CF832332; organism=Citrus sinensis; type=EST; length=377bp
AATGGCGACTGCTGTACTGGCACTGTCTCAAGACCCATCGCCCCCTCGCT
ACAATGTGAACCTCTTCATTAGGTGGACTTTCAAGGATGTTCAGGTCAAT
GACATCTAGTTGAATGATTATATTGGCGTGCGAGCGGCCAAGCACGCTAC
TTATGTGCCTCACACTGCTGGGAGGTACTCTATTAAGCGTTTCCCGAAGG
CCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGT
CGAAACAACGGCTACAAATTGATGGCTGTCACGATTGTTAACCATGCCTT
GGAGATCATTCACCTTTTGACCGACCACAACCCAATTCAAGTCATTGGTG
ATGCTGTCATCAACAGGGGTCCAAGGG
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