CF832332

Overview
NameCF832332
Unique NameCF832332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_HALMA (30S ribosomal protein S7P OS=Haloarcula marismortui GN=rps7p PE=1 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.603e-16
Identity = 46/117 (39.32%), Postives = 63/117 (53.85%), Query Frame = 2
Query:   26 SQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            +++  P      LF  W   D++ +D     YI V      T + HT GR++ K+F K++  IVERL N LM    N G K +A +IV  A E++H  TD NPIQV+  AV N  PR
Sbjct:   14 AEESEPETARAKLFGEWDITDIEYSDPSTERYITV------TPIAHTMGRHADKQFKKSEISIVERLINRLMQTDENTGKKQLATSIVTEAFELVHERTDENPIQVLVSAVENSAPR 124          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_CALMQ (30S ribosomal protein S7P OS=Caldivirga maquilingensis (strain DSMZ 13496 / IC-167) GN=rps7p PE=3 SV=2)

HSP 1 Score: 83.1889 bits (204), Expect = 4.603e-16
Identity = 44/105 (41.90%), Postives = 61/105 (58.10%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            LF +W   DV + D  L  Y+ ++       +PHT G+Y  ++F KA  PI+ER+ N LM  GRN G K  A  I+  A +II++ T  NP+QV  DAV+N  PR
Sbjct:   42 LFGKWNVNDVVIRDPGLRRYMCLKPM----LLPHTEGKYQNRKFGKAMIPIIERMMNQLMKPGRNAGKKQKAYKILKTAFDIIYVATGKNPVQVFVDAVVNVAPR 142          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_HALSA (30S ribosomal protein S7P OS=Halobacterium salinarium GN=rps7p PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 6.011e-16
Identity = 49/119 (41.18%), Postives = 63/119 (52.94%), Query Frame = 2
Query:   20 ALSQDPSPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            A S+D      N  LF +W   ++   D     Y+ V      T V HT GR++ K+F K++  IVERL N LM  G N G K  A+ IV  A +I+H  TD NPIQV+  AV N  PR
Sbjct:   16 AESEDTQEVAANAKLFGKWDVAEIHYEDPSTRRYLAV------TPVAHTMGRHAQKQFKKSEISIVERLANRLMKTGANAGKKQQALKIVRDAFDIVHERTDENPIQVLVSAVENAAPR 128          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_KORCO (30S ribosomal protein S7P OS=Korarchaeum cryptofilum (strain OPF8) GN=rps7p PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.851e-16
Identity = 47/121 (38.84%), Postives = 67/121 (55.37%), Query Frame = 2
Query:   38 SPPRYNVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLM------------MHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVIN 364
            S P   + LF RW++ D+++ +  L + I ++      Y+PHT GR+  K+F K + PIVERL N LM            ++ +N G KL A+  V +A EII L T  NPIQV  DA+ N
Sbjct:    5 SNPETQIKLFGRWSYDDLRIENAALKNVISLKPV----YLPHTGGRHEHKKFGKLEIPIVERLVNRLMGQAMNSGSRKDHVNSKNQGKKLKAMRTVKYAFEIIELRTGKNPIQVFLDAIEN 121          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METMP (30S ribosomal protein S7P OS=Methanococcus maripaludis GN=rps7p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.339e-15
Identity = 49/107 (45.79%), Postives = 59/107 (55.14%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF +W  + V V D  L  YI V        VPHTAGR S K F K++  IVERL N LM +  N G K   + IV  AL II   T  NP+QV+ DA+ N GPR
Sbjct:    3 IKLFGKWDSETVAVKDPSLKSYISVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPR 105          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METM5 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rps7p PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.339e-15
Identity = 49/107 (45.79%), Postives = 59/107 (55.14%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF +W  + V V D  L  YI V        VPHTAGR + K F KA+  IVERL N LM +  N G K   + IV  AL II   T  NP+QV+ DA+ N GPR
Sbjct:    3 IKLFGKWDSETVTVKDPSLKSYISVAPV----LVPHTAGRNTKKSFDKAKMNIVERLANKLMANQNNTGKKHETLAIVEEALAIIENRTKENPVQVLVDALENSGPR 105          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METM7 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rps7p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 48/107 (44.86%), Postives = 59/107 (55.14%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF +W  + V V D  L  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N G K   + IV  AL II   T  NP+QV+ DA+ N GPR
Sbjct:    3 IKLFGKWDSETVTVKDPSLKSYVSVAPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQENTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPR 105          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METM6 (30S ribosomal protein S7P OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rps7p PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 48/107 (44.86%), Postives = 59/107 (55.14%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF +W  + V V D  L  Y+ V        VPHTAGR S K F K++  IVERL N LM +  N G K   + IV  AL II   T  NP+QV+ DA+ N GPR
Sbjct:    3 IKLFGKWDSETVTVKDPSLKSYVSVTPV----LVPHTAGRNSKKSFDKSKMNIVERLANKLMANQNNTGKKHETLAIVEEALTIIENRTKENPVQVLVDALENSGPR 105          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_META3 (30S ribosomal protein S7P OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rps7p PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.983e-15
Identity = 44/107 (41.12%), Postives = 64/107 (59.81%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF +W   ++ V D  L  YI +       +VPHT+GR S + F KA+  IVERL N+LM   +N G K + ++IV  A EII   T+ NP++V+ +A+ N GPR
Sbjct:    3 IKLFNKWDTTEIVVKDPSLRHYINLEPI----FVPHTSGRNSGRMFEKAKMNIVERLVNNLMRAEQNTGQKQVTLSIVEEAFEIIEKRTNENPVKVLVEALENGGPR 105          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METHJ (30S ribosomal protein S7P OS=Methanospirillum hungatei (strain JF-1 / DSM 864) GN=rps7p PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 3.896e-15
Identity = 45/105 (42.86%), Postives = 60/105 (57.14%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            LF RW   +V + D  +  Y+ +    ++  VPH+ GR + + F KA   IVERL N LM    N G K +A+ IV  A EI+H  T  NPI+V+ DAV N GPR
Sbjct:   12 LFNRWDTSEVTIRDPGIARYVNL----NSMMVPHSCGRLTRQEFHKANMLIVERLINQLMRTEVNTGKKQLAIRIVRDAFEIVHQKTKKNPIEVLCDAVANAGPR 112          
The following BLAST results are available for this feature:
BLAST of CF832332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS7_HALMA4.603e-1639.3230S ribosomal protein S7P OS=Haloarcula marismortu... [more]
RS7_CALMQ4.603e-1641.9030S ribosomal protein S7P OS=Caldivirga maquilinge... [more]
RS7_HALSA6.011e-1641.1830S ribosomal protein S7P OS=Halobacterium salinar... [more]
RS7_KORCO7.851e-1638.8430S ribosomal protein S7P OS=Korarchaeum cryptofil... [more]
RS7_METMP1.339e-1545.7930S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM51.339e-1545.7930S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM71.749e-1544.8630S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_METM61.749e-1544.8630S ribosomal protein S7P OS=Methanococcus maripal... [more]
RS7_META32.983e-1541.1230S ribosomal protein S7P OS=Methanococcus aeolicu... [more]
RS7_METHJ3.896e-1542.8630S ribosomal protein S7P OS=Methanospirillum hung... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832332 ID=CF832332; Name=CF832332; organism=Citrus sinensis; type=EST; length=377bp
AATGGCGACTGCTGTACTGGCACTGTCTCAAGACCCATCGCCCCCTCGCT
ACAATGTGAACCTCTTCATTAGGTGGACTTTCAAGGATGTTCAGGTCAAT
GACATCTAGTTGAATGATTATATTGGCGTGCGAGCGGCCAAGCACGCTAC
TTATGTGCCTCACACTGCTGGGAGGTACTCTATTAAGCGTTTCCCGAAGG
CCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGT
CGAAACAACGGCTACAAATTGATGGCTGTCACGATTGTTAACCATGCCTT
GGAGATCATTCACCTTTTGACCGACCACAACCCAATTCAAGTCATTGGTG
ATGCTGTCATCAACAGGGGTCCAAGGG
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