CF832332

Overview
NameCF832332
Unique NameCF832332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length377
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METTP (30S ribosomal protein S7P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps7p PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.637e-13
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + +F +W   +V++ D+ +  YI ++       V HT GR++ ++F K++  +VERL N +M   +N G K +A  IV  A +IIH  T  NP+ V+  A+ N GPR
Sbjct:    1 MKVFGKWDASEVEIPDLSVKGYINLKPR----IVLHTGGRHAKQQFKKSELHVVERLINKMMRKEKNTGQKQIAYRIVEEAFDIIHSRTKENPLSVLVRAISNAGPR 103          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_METBF (30S ribosomal protein S7P OS=Methanosarcina barkeri (strain Fusaro / DSM 804) GN=rps7p PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.647e-13
Identity = 38/107 (35.51%), Postives = 62/107 (57.94%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + +F +W   +V+V D+ +  Y+ +        VPH++G+++ ++F K++  IVERL N+LM    N G K   +  V  A +I+   T  NPIQV+ DA+ N GPR
Sbjct:    1 MKIFGKWDPTEVEVRDLGIKRYVSLTPV----IVPHSSGKHARQQFNKSEISIVERLANNLMRTEINTGKKQKTLRAVEEAFDIVSKKTKQNPIQVLVDAIANAGPR 103          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_HALWD (30S ribosomal protein S7P OS=Haloquadratum walsbyi (strain DSM 16790) GN=rps7p PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.061e-12
Identity = 40/108 (37.04%), Postives = 56/108 (51.85%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            N  LF  W   +++  D     YI V      T + HT GR++ K+F K++  +VERL N LM    N G+K   + IV  A + IH  T+ NP+QV+   V N  PR
Sbjct:   44 NAKLFGEWDVSEIEYEDPSTQRYITV------TPIAHTMGRHAAKQFEKSKISVVERLINRLMQTEDNTGHKQKTMNIVEDAFDTIHNRTEENPVQVLVRGVENAAPR 145          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_HALMO (30S ribosomal protein S7P OS=Halococcus morrhuae GN=rps7p PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 4.032e-12
Identity = 42/105 (40.00%), Postives = 57/105 (54.29%), Query Frame = 2
Query:   62 LFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            LF RW    ++ +D     YI V      T V HT GR++ K+F K++  IVERL N LM    N G K  A  IV +A ++I   T+ +P+QV+  AV N  PR
Sbjct:   23 LFERWDVTGIEYDDPSTERYITV------TPVEHTMGRHAGKQFQKSEISIVERLINRLMQTDENTGKKQQATRIVRNAFDLIAERTEESPVQVLVSAVENAAPR 121          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_CENSY (30S ribosomal protein S7P OS=Cenarchaeum symbiosum GN=rps7p PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 8.983e-12
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 2
Query:   53 NVNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMH---------GRNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGP 373
            N+ LF +W   D++V D  L   I +R       +P+T GR ++KRF KA   IVERL N  MMH         GR  G K+ ++  V  A EII+L T  NP++V+  AV N  P
Sbjct:    6 NLLLFRKWDLSDIEVVDPGLKTAISLRKMT----LPYTYGRSALKRFNKADANIVERLANK-MMHFGKKYAKNTGRMAGKKMGSINTVKTAFEIINLKTGRNPVEVLVRAVENSAP 116          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_NANEQ (30S ribosomal protein S7P OS=Nanoarchaeum equitans GN=rps7p PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 2.001e-11
Identity = 42/118 (35.59%), Postives = 57/118 (48.31%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHG-----------RNNGYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + LF RW ++DV V D  L DYI ++       +P++ GR+   RF KA+ PI+ERL   LM  G              G K  A  I+    EII   T  NP++V   A+ N  PR
Sbjct:    3 MKLFGRWDYEDVTVEDPGLRDYINLKPM----LIPYSGGRHQKHRFGKAKIPIIERLAGRLMTSGHLGKKHKWTSEHQTGKKYNAYKIIIRTFEIIEKRTKQNPLKVFVKAIENAAPR 116          
BLAST of CF832332 vs. ExPASy Swiss-Prot
Match: RS7_THEGJ (30S ribosomal protein S7P OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=rps7p PE=3 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.931e-11
Identity = 45/123 (36.59%), Postives = 60/123 (48.78%), Query Frame = 2
Query:   56 VNLFIRWTFKDVQVNDI*LNDYIGVRAAKHATYVPHTAGRYSIKRFPKAQCPIVERLTNSLMMHGRNN----------------GYKLMAVTIVNHALEIIHLLTDHNPIQVIGDAVINRGPR 376
            + +F RW+ +DV VND  L  YI    A     +PH+ GR++ K F KAQ  IVERL N +M  G ++                  K+ A  +V  A  II   T  NPIQV+  A+ N  PR
Sbjct:   15 LKVFGRWSVEDVTVNDPSLRPYI----ALEPRILPHSHGRHAKKPFGKAQVHIVERLINKVMRSGASHYKAGGHFMRREHRSIMSKKMKAYEVVKEAFMIIERRTKQNPIQVLIRAIENSAPR 133          
The following BLAST results are available for this feature:
BLAST of CF832332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
RS7_METTP1.637e-1335.5130S ribosomal protein S7P OS=Methanosaeta thermoph... [more]
RS7_METBF3.647e-1335.5130S ribosomal protein S7P OS=Methanosarcina barker... [more]
RS7_HALWD1.061e-1237.0430S ribosomal protein S7P OS=Haloquadratum walsbyi... [more]
RS7_HALMO4.032e-1240.0030S ribosomal protein S7P OS=Halococcus morrhuae G... [more]
RS7_CENSY8.983e-1239.6630S ribosomal protein S7P OS=Cenarchaeum symbiosum... [more]
RS7_NANEQ2.001e-1135.5930S ribosomal protein S7P OS=Nanoarchaeum equitans... [more]
RS7_THEGJ9.931e-1136.5930S ribosomal protein S7P OS=Thermococcus gammatol... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832332 ID=CF832332; Name=CF832332; organism=Citrus sinensis; type=EST; length=377bp
AATGGCGACTGCTGTACTGGCACTGTCTCAAGACCCATCGCCCCCTCGCT
ACAATGTGAACCTCTTCATTAGGTGGACTTTCAAGGATGTTCAGGTCAAT
GACATCTAGTTGAATGATTATATTGGCGTGCGAGCGGCCAAGCACGCTAC
TTATGTGCCTCACACTGCTGGGAGGTACTCTATTAAGCGTTTCCCGAAGG
CCCAATGTCCCATTGTTGAGAGGCTTACGAACTCTCTTATGATGCACGGT
CGAAACAACGGCTACAAATTGATGGCTGTCACGATTGTTAACCATGCCTT
GGAGATCATTCACCTTTTGACCGACCACAACCCAATTCAAGTCATTGGTG
ATGCTGTCATCAACAGGGGTCCAAGGG
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