CF832337

Overview
NameCF832337
Unique NameCF832337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP228_ARATH (Pentatricopeptide repeat-containing protein At3g13880 OS=Arabidopsis thaliana GN=PCMP-E89 PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.737e-11
Identity = 34/97 (35.05%), Postives = 56/97 (57.73%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLE 295
            ALL++CR+++   +G+  A  + E +    G YVLL N+Y  SG      +VR LMR++G+  +P  SW+ +  + H+F   D  HP  + I ++LE
Sbjct:  633 ALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVRELMRDRGVKKEPALSWIVIGNQTHSFAVADLSHPSSQMIYTMLE 729          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP260_ARATH (Pentatricopeptide repeat-containing protein At3g28660 OS=Arabidopsis thaliana GN=PCMP-E80 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 38/101 (37.62%), Postives = 61/101 (60.40%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHV----GYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVL 292
            GALLN CR H+ +ELGELA  ++ + +  +V       V L N+Y +  +  E  KVR ++ ++G+   PG S +EV G V  F+SGD  HP + +I++++
Sbjct:  393 GALLNGCRTHKNVELGELAVQNLLDLEKGNVEEEEAALVQLSNIYFSVQRNPEAFKVRGMIEQRGIRKTPGWSLLEVDGIVTKFVSGDVSHPNLLQIHTLI 493          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP167_ARATH (Pentatricopeptide repeat-containing protein At2g21090 OS=Arabidopsis thaliana GN=PCMP-E48 PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.963e-11
Identity = 32/91 (35.16%), Postives = 53/91 (58.24%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKE 277
            A+L  CRIH   ELG+ AA  + + D      Y+LL ++YA  GKW+ V K+R +M+++ +  +   SW+E++ +V AF   D  H   ++
Sbjct:  486 AILGVCRIHGNEELGKKAADELIKLDPESSAPYILLSSIYADHGKWELVEKLRGVMKKRRVNKEKAVSWIEIEKKVEAFTVSDGSHAHARK 576          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP242_ARATH (Putative pentatricopeptide repeat-containing protein At3g18840 OS=Arabidopsis thaliana GN=PCMP-E92 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.870e-11
Identity = 34/97 (35.05%), Postives = 53/97 (54.64%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVL 292
            GA LNAC  ++  EL +     +   +  +   Y+ + N YA+SG+WDE+ ++R  MR K L I  GCSW  +  + H F S D  H + + I ++L
Sbjct:  567 GAFLNACSWNKNTELVKEVEEKLLVIEGSNGSRYIQIANAYASSGRWDEMQRIRHQMRGKELEIFSGCSWANIDKQFHMFTSSDISHYETEAIYAML 663          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP261_ARATH (Pentatricopeptide repeat-containing protein At3g29230 OS=Arabidopsis thaliana GN=PCMP-E27 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 35/102 (34.31%), Postives = 55/102 (53.92%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYE 307
            GALL ACR+H  +++ +    ++ + D    G Y LL N+YAA+  W+ VA +R  M+  G+    G S VE++  +H F   D  HP+  +I  +L    E
Sbjct:  488 GALLGACRMHNEVDIAKEVLDNLVKLDPCDPGNYSLLSNIYAAAEDWEGVADIRSKMKSMGVEKPSGASSVELEDGIHEFTVFDKSHPKSDQIYQMLGSLIE 589          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP255_ARATH (Putative pentatricopeptide repeat-containing protein At3g25970 OS=Arabidopsis thaliana GN=PCMP-E46 PE=3 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 31/102 (30.39%), Postives = 59/102 (57.84%), Query Frame = 2
Query:   11 LNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 316
            L  CR    +E+    A H+ E +      YV L ++Y+   KW+E A V+++M+E+G+   PG SW+E++ +V AF + D  +P  ++I  +++   ++M+
Sbjct:  585 LGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRNQVKAFNAEDRSNPLCQDIYMMIKDLTQEMQ 686          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP148_ARATH (Pentatricopeptide repeat-containing protein At2g04860 OS=Arabidopsis thaliana GN=PCMP-E74 PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 6.601e-11
Identity = 31/61 (50.82%), Postives = 42/61 (68.85%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKG 184
            GALL+AC IHR LE+GE  A  +F  D ++ G YVL+ NLYA    WD+V +VR +M++ G
Sbjct:  572 GALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVRVRNMMKDNG 632          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP201_ARATH (Pentatricopeptide repeat-containing protein At2g44880 OS=Arabidopsis thaliana GN=PCMP-E9 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.621e-11
Identity = 35/96 (36.46%), Postives = 54/96 (56.25%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVL 292
            + L+AC  ++ +E  E       E + ++ G YVLL NLYAA  +WD+   V+ +MR+     + GCS +E+   V  F+SGD  HP  + I+ VL
Sbjct:  446 SFLSACGQYKDIERAERILKKAVELEPQNDGNYVLLRNLYAADKRWDDFGMVKNVMRKNQAKKEVGCSLIEINYIVSEFISGDTTHPHRRSIHLVL 541          
The following BLAST results are available for this feature:
BLAST of CF832337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PP228_ARATH1.737e-1135.05Pentatricopeptide repeat-containing protein At3g13... [more]
PP260_ARATH2.963e-1137.62Pentatricopeptide repeat-containing protein At3g28... [more]
PP167_ARATH2.963e-1135.16Pentatricopeptide repeat-containing protein At2g21... [more]
PP242_ARATH3.870e-1135.05Putative pentatricopeptide repeat-containing prote... [more]
PP261_ARATH6.601e-1134.31Pentatricopeptide repeat-containing protein At3g29... [more]
PP255_ARATH6.601e-1130.39Putative pentatricopeptide repeat-containing prote... [more]
PP148_ARATH6.601e-1150.82Pentatricopeptide repeat-containing protein At2g04... [more]
PP201_ARATH8.621e-1136.46Pentatricopeptide repeat-containing protein At2g44... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832337 ID=CF832337; Name=CF832337; organism=Citrus sinensis; type=EST; length=714bp
GGGAGCCTTACTAAATGCATGCAGGATTCATCGATGGCTTGAGCTTGGGG
AACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTAT
TACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGT
TGCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCG
GGTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGT
GACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATT
TTATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCA
TGGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAG
ATGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTAT
TTGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCA
AGTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAA
CATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTA
CTGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTC
TATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTGGTGAAAC
TTGTACACTTGGGC
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