CF832337

Overview
NameCF832337
Unique NameCF832337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP272_ARATH (Pentatricopeptide repeat-containing protein At3g49170, chloroplastic OS=Arabidopsis thaliana GN=EMB2261 PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.655e-44
Identity = 88/203 (43.35%), Postives = 119/203 (58.62%), Query Frame = 2
Query:   11 LNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDK-----SEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            L ACR+H   ELG+LAA  I E D      Y+ L N+YA +GKW+E  ++RR M+E+ L  + GCSW+EV  ++H F  GD  HP   +I   L+    ++K  G+     + + K      EA K  +   HSE +AVAFGLI+T+   P+ V KNL  C  CHN +K+IS +  R+I +RD   FHHFKDG CSC D  YW
Sbjct:  650 LGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAGKWEESTEMRRKMKERNLVKEGGCSWIEVGDKIHKFYVGDTAHPNAHQIYDELDRLITEIKRCGYVPDTDLVLHKLEEENDEAEKERLLYQHSEKIAVAFGLISTSKSRPVRVFKNLRVCGDCHNAMKYISTVSGREIVLRDLNRFHHFKDGKCSCND--YW 850          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP390_ARATH (Pentatricopeptide repeat-containing protein At5g16860 OS=Arabidopsis thaliana GN=PCMP-H92 PE=2 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 3.468e-44
Identity = 90/202 (44.55%), Postives = 124/202 (61.39%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVE-VKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            A L+ CRIH  +ELGE AA  I E  + H G Y LL NLYA +G+W +V ++R LMR KG+   PGCSWVE +KG    F  GD  HP  KEI  VL    +++K +G+   + +   D  +  K ++   HSE LA+A+G++ T  G  I +TKNL  C  CH    ++S+I+  DI +RD+  FHHFK+G+CSC  +GYW
Sbjct:  652 AFLSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVKKRPGCSWVEGIKGTT-TFFVGDKTHPHAKEIYQVLLDHMQRIKDIGYVPETGFALHDVDDEEKDDLLFEHSEKLALAYGILTTPQGAAIRITKNLRVCGDCHTAFTYMSRIIDHDIILRDSSRFHHFKNGSCSC--KGYW 850          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP449_ARATH (Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.726e-44
Identity = 92/203 (45.32%), Postives = 122/203 (60.10%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAE-IFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GALL ACRIH+ +ELGE     +   D  H G YV   N++A   KWD+ A+ RRLM+E+G+   PGCS + ++G  H FL+GD  HP+I++I S       K++  G+    E + +D  +  + E I   HSE LA+ +GLI T PG  I + KNL  C  CH   K ISKI +RDI +RD   FHHF+DG CSCGD  YW
Sbjct:  420 GALLKACRIHKNIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTISLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVHQHSEKLAITYGLIKTKPGTIIRIMKNLRVCKDCHKVTKLISKIYKRDIVMRDRTRFHHFRDGKCSCGD--YW 620          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP274_ARATH (Pentatricopeptide repeat-containing protein At3g49710 OS=Arabidopsis thaliana GN=PCMP-H79 PE=2 SV=1)

HSP 1 Score: 177.178 bits (448), Expect = 7.726e-44
Identity = 94/204 (46.08%), Postives = 123/204 (60.29%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSE---YVSMDKSEASKAEIFCG-HSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            ALL ACR H+ + L E AA  +          YV+L N+YA + KW+E+A VR+ MR K +   PGCSW+EVK + H F++ D  HP I+E+N  LE   +KMK VG+   +    V  D++     E+  G HSE LAVAFGL++T  G  + V KNL  C  CHN +KF+S +  R+I VRD   FH FKDG CSCGD  YW
Sbjct:  520 ALLGACRKHKNMALAERAANELMVMQPLAATPYVMLANMYADARKWEEMASVRKSMRGKRIRKKPGCSWIEVKKKKHVFVAEDWSHPMIREVNEYLEEMMKKMKKVGYVMDKKWAMVKEDEAGEGDEEMRLGHHSEKLAVAFGLMSTRDGEELVVVKNLRICGDCHNAIKFMSAVAGREIIVRDNLRFHCFKDGKCSCGD--YW 721          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP410_ARATH (Putative pentatricopeptide repeat-containing protein At5g40405 OS=Arabidopsis thaliana GN=PCMP-H14 PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.009e-43
Identity = 89/201 (44.28%), Postives = 123/201 (61.19%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            +LL+A R+++ LELG LA+  + E +T + G YVLL N+YA S  WD V+ VR+ M+ KG+   PGCS +EV GEVH F  GD  HP+  +I++V +    +++  G+ A +  V  D  E  K +  C HSE  A+AFG+++    +PI + KNL  C  CH     ISKI  R+I VRD   FHHFKDG CSC   G+W
Sbjct:  414 SLLHASRMYKNLELGVLASKKMLELETANHGAYVLLSNIYADSNDWDNVSHVRQSMKSKGVRKQPGCSVMEVNGEVHEFFVGDKSHPKYTQIDAVWKDISRRLRLAGYKADTTPVMFDIDEEEKEDALCLHSEKAAIAFGIMSLKEDVPIRIVKNLRVCGDCHQVSMMISKIFNREIIVRDRNRFHHFKDGHCSC--NGFW 612          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP267_ARATH (Pentatricopeptide repeat-containing protein At3g47530 OS=Arabidopsis thaliana GN=PCMP-H76 PE=2 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.009e-43
Identity = 90/202 (44.55%), Postives = 122/202 (60.40%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG---SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LL ACR+H  +ELGE    H+ E      G YVLL N Y+  GKW++V ++R LM+EK +   PGCS +E++G VH F+  D  HP+ +EI  +L    +++K  G+     SE  +++ SE  K      HSE LA+AFG++ T PG  I VTKNL TC  CHN  KF+S +  R + VRD   FHHFK G+CSC D  +W
Sbjct:  393 LLGACRVHGDVELGERVISHLIELKAEEAGDYVLLLNTYSTVGKWEKVTELRSLMKEKRIHTKPGCSAIELQGTVHEFIVDDVSHPRKEEIYKMLAEINQQLKIAGYVAEITSELHNLE-SEEEKGYALRYHSEKLAIAFGILVTPPGTTIRVTKNLRTCVDCHNFAKFVSDVYDRIVIVRDRSRFHHFKGGSCSCND--FW 591          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP296_ARATH (Pentatricopeptide repeat-containing protein At3g63370 OS=Arabidopsis thaliana GN=PCMP-H83 PE=2 SV=2)

HSP 1 Score: 176.022 bits (445), Expect = 1.721e-43
Identity = 85/198 (42.93%), Postives = 123/198 (62.12%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKM-KAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 592
            ALL ACR H   E+GE+AA  + E + ++ G  VL+ N++A  G+W++V KVR  M+  G+   PGCSW+E+ G+VH F + D  HP+ KEI   L     K+ + VG+ A +++V  +  E  K ++  GHSE +A+A+GL+ T     + +TKNL  C  CH   K +SK+ RRDI +RD   FHHF+ G CSCGD
Sbjct:  761 ALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRAKMKASGMEKHPGCSWIEMDGKVHKFTARDKSHPESKEIYEKLSEVTRKLEREVGYVADTKFVLHNVDEGEKVQMLHGHSERIAIAYGLLRTPDRACLRITKNLRVCRDCHTFCKLVSKLFRRDIVMRDANRFHHFESGLCSCGD 958          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP411_ARATH (Pentatricopeptide repeat-containing protein At5g40410, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H15 PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.936e-43
Identity = 89/203 (43.84%), Postives = 131/203 (64.53%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKA-VGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GALL ACR+++  +LG  AA  +FE + R    YV+L N+Y+ASG W + +++R LM++KGL    GCS++E   ++H F+ GD  HP+ ++I   L+   +KMK+ +G+ + +E+V  D  E  K E+   HSE +A+AFGL+  +P  PI + KNL  C  CH T K IS I +R I +RD++ FHHF DG+CSC D  YW
Sbjct:  408 GALLGACRVYKDTQLGTKAAERLFELEPRDGRNYVMLSNIYSASGLWKDASRIRNLMKQKGLVRASGCSYIEHGNKIHKFVVGDWSHPESEKIQKKLKEIRKKMKSEMGYKSKTEFVLHDVGEDVKEEMINQHSEKIAMAFGLLVVSPMEPIIIRKNLRICGDCHETAKAISLIEKRRIIIRDSKRFHHFLDGSCSCSD--YW 608          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP108_ARATH (Putative pentatricopeptide repeat-containing protein At1g68930 OS=Arabidopsis thaliana GN=PCMP-H22 PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.936e-43
Identity = 92/200 (46.00%), Postives = 122/200 (61.00%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LL+ACR    LE+G+ AA  + E D  H   Y LL ++YA+ GKWD VA++RR MREK +  +PG SW++ KG++H+F + D   P + +I + LE    K+   G+   + +V  D  EA K ++   HSE LA+AFGLI    G PI V KNL  C  CHN  K IS +  R+I VRD   FH FKDGTCSCGD  +W
Sbjct:  546 LLSACRNKGNLEIGKWAAESLIELDPHHPAGYTLLSSIYASKGKWDSVAQLRRGMREKNVKKEPGQSWIKWKGKLHSFSADDESSPYLDQIYAKLEELNNKIIDNGYKPDTSFVHHDVEEAVKVKMLNYHSERLAIAFGLIFVPSGQPIRVGKNLRVCVDCHNATKHISSVTGREILVRDAVRFHRFKDGTCSCGD--FW 743          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP271_ARATH (Putative pentatricopeptide repeat-containing protein At3g49140 OS=Arabidopsis thaliana GN=PCMP-H77 PE=3 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.834e-43
Identity = 94/207 (45.41%), Postives = 119/207 (57.49%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTA-----PGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GALL ACR+H   ++G LAA  +F+      GYYVLL N+YA +G+W+EV  +R +M+ KGL  +PG S VEV   +H FL GD  HPQ  EI   L+   +KMK +G+   SE    D  E  K      HSE LA+ F L+NT          I +TKNL  C  CH   K IS+I  R+I +RDT  FH F+ G CSCGD  YW
Sbjct:  482 GALLGACRVHSDTDIGLLAADKLFQLAPEQSGYYVLLSNIYAKAGRWEEVTNIRNIMKSKGLKKNPGASNVEVNRIIHTFLVGDRSHPQSDEIYRELDVLVKKMKELGYVPDSESALHDVEEEDKETHLAVHSEKLAIVFALMNTKEEEEDSNNTIRITKNLRICGDCHVAAKLISQITSREIIIRDTNRFHVFRFGVCSCGD--YW 686          
The following BLAST results are available for this feature:
BLAST of CF832337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PP272_ARATH2.655e-4443.35Pentatricopeptide repeat-containing protein At3g49... [more]
PP390_ARATH3.468e-4444.55Pentatricopeptide repeat-containing protein At5g16... [more]
PP449_ARATH7.726e-4445.32Pentatricopeptide repeat-containing protein At5g66... [more]
PP274_ARATH7.726e-4446.08Pentatricopeptide repeat-containing protein At3g49... [more]
PP410_ARATH1.009e-4344.28Putative pentatricopeptide repeat-containing prote... [more]
PP267_ARATH1.009e-4344.55Pentatricopeptide repeat-containing protein At3g47... [more]
PP296_ARATH1.721e-4342.93Pentatricopeptide repeat-containing protein At3g63... [more]
PP411_ARATH2.936e-4343.84Pentatricopeptide repeat-containing protein At5g40... [more]
PP108_ARATH2.936e-4346.00Putative pentatricopeptide repeat-containing prote... [more]
PP271_ARATH3.834e-4345.41Putative pentatricopeptide repeat-containing prote... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832337 ID=CF832337; Name=CF832337; organism=Citrus sinensis; type=EST; length=714bp
GGGAGCCTTACTAAATGCATGCAGGATTCATCGATGGCTTGAGCTTGGGG
AACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTAT
TACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGT
TGCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCG
GGTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGT
GACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATT
TTATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCA
TGGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAG
ATGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTAT
TTGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCA
AGTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAA
CATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTA
CTGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTC
TATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTGGTGAAAC
TTGTACACTTGGGC
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