CF832337

Overview
NameCF832337
Unique NameCF832337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP147_ARATH (Pentatricopeptide repeat-containing protein At2g03880, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H44 PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 2.748e-41
Identity = 84/200 (42.00%), Postives = 114/200 (57.00%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LL ACR+ R + L E AA  +   D    G Y LL N+YA S KWD V ++R  MR++G+  +PGCSW+EV  ++HAF+ GDN HPQI E++  L     ++  +G+   + +V  D       +    HSE LA+AFGL+       I + KNL  C  CH   K  SK+  R I +RD   +HHF+DG CSCGD  YW
Sbjct:  433 LLGACRVQRNMVLAEYAAKKVIALDPEDAGTYTLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVSKKLNQLIHRLTGIGYVPETNFVLQDLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRIRKNLRICGDCHVFCKLASKLEIRSIVIRDPIRYHHFQDGKCSCGD--YW 630          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP364_ARATH (Pentatricopeptide repeat-containing protein At5g04780 OS=Arabidopsis thaliana GN=PCMP-H16 PE=2 SV=2)

HSP 1 Score: 168.318 bits (425), Expect = 3.589e-41
Identity = 85/202 (42.08%), Postives = 123/202 (60.89%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            G+LL +CR+++ LEL E+AA  +FE +  + G +VLL N+YAA+ +W+E+AK R+L+R+  +    G SW+++K +VH F  G++ HP+I+EI S L+    K +  G+  S E+   D     K E+   HSE LA+ FGL+      P+ + KNL  C  CH  +K  S   RR I VRD   FHHF DG CSCGD  +W
Sbjct:  436 GSLLASCRVYKNLELAEVAAEKLFELEPENAGNHVLLSNIYAANKQWEEIAKSRKLLRDCDVKKVRGKSWIDIKDKVHTFSVGESGHPRIREICSTLDNLVIKFRKFGYKPSVEHELHDVEIGKKEELLMQHSEKLALVFGLMCLPESSPVRIMKNLRICVDCHEFMKAASMATRRFIIVRDVNRFHHFSDGHCSCGD--FW 635          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP406_ARATH (Pentatricopeptide repeat-containing protein At5g39680 OS=Arabidopsis thaliana GN=EMB2744 PE=2 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 87/203 (42.86%), Postives = 122/203 (60.10%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF----AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LLNAC + R   LG+  A +  E      G YVLL N++A S +W+ VAKVR LM  +G+  +PG SW+ ++ + H FL+ DN HP+I  I + ++    K+K +G+    AG+ +   D  E  + +    HSE LAVA+GLI T    P++VTKN+  C  CH+ +K ISKI +R I +RD+  FHHF DG CSC D  YW
Sbjct:  513 LLNACYVRRNYRLGKKVAEYAIEKYPNDSGVYVLLSNIHAKSREWEGVAKVRSLMNNRGVKKEPGVSWIGIRNQTHVFLAEDNQHPEITLIYAKVKEVMSKIKPLGYSPDVAGAFH---DVDEEQREDNLSYHSEKLAVAYGLIKTPEKSPLYVTKNVRICDDCHSAIKLISKISKRYIVIRDSNRFHHFLDGQCSCCD--YW 710          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP312_ARATH (Pentatricopeptide repeat-containing protein At4g14850 OS=Arabidopsis thaliana GN=LOI1 PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 7.995e-41
Identity = 90/202 (44.55%), Postives = 121/202 (59.90%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GAL NACR+H   +LG LAA ++F+ D +  G +VLL N +AA+G+W E   VR  ++  G+    G SW+ VK +VHAF + D  H   KEI + L     +M+A G+     +S+ D  E  KA     HSE LA+AFGL++    +PI +TKNL  C  CH+  KF+S  V+R+I VRD   FH FKDG CSC D  YW
Sbjct:  485 GALQNACRMHGKPQLGLLAAENLFKLDPKDSGNHVLLSNTFAAAGRWAEANTVREELKGVGIKKGAGYSWITVKNQVHAFQAKDRSHILNKEIQTTLAKLRNEMEAAGYKPDLKLSLYDLEEEEKAAEVSHHSEKLALAFGLLSLPLSVPIRITKNLRICGDCHSFFKFVSGSVKREIIVRDNNRFHRFKDGICSCKD--YW 684          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP429_ARATH (Putative pentatricopeptide repeat-containing protein At5g52630 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 164.851 bits (416), Expect = 3.968e-40
Identity = 86/202 (42.57%), Postives = 116/202 (57.43%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GALL +C +H+  EL   AA  +FE      G ++ L N YAA G++++ AK R+L+R++G   + G SWVE + +VH F +G+  H + KEI   L    E+M+  G+ A + YV  +     K +    HSE LA+AFGLI      PI V KNL  C  CHN +KF+S   RR I VRD   FH F+DG CSC D  YW
Sbjct:  389 GALLTSCTVHKNTELAAFAADKVFELGPVSSGMHISLSNAYAADGRFEDAAKARKLLRDRGEKKETGLSWVEERNKVHTFAAGERRHEKSKEIYEKLAELGEEMEKAGYIADTSYVLREVDGDEKNQTIRYHSERLAIAFGLITFPADRPIRVMKNLRVCGDCHNAIKFMSVCTRRVIIVRDNNRFHRFEDGKCSCND--YW 588          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PPR84_ARATH (Pentatricopeptide repeat-containing protein At1g56690, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H69 PE=2 SV=1)

HSP 1 Score: 164.081 bits (414), Expect = 6.768e-40
Identity = 87/203 (42.86%), Postives = 118/203 (58.13%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGD-NFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GALL AC+ H  L+L E+AA  +FE +  + G YVLL ++ A+  KW +VA VR+ MR   ++  PGCSW+EV  +VH F  G    HP+   I  +LE     ++  G++    +V  D  E  K +    HSE LAVA+GL+    G+PI V KNL  C  CH  +K ISK+  R+I +RD   FHHF +G CSC D  YW
Sbjct:  504 GALLGACKTHSRLDLAEVAAKKLFENEPDNAGTYVLLSSINASRSKWGDVAVVRKNMRTNNVSKFPGCSWIEVGKKVHMFTRGGIKNHPEQAMILMMLEKTDGLLREAGYSPDCSHVLHDVDEEEKVDSLSRHSERLAVAYGLLKLPEGVPIRVMKNLRVCGDCHAAIKLISKVTEREIILRDANRFHHFNNGECSCRD--YW 704          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP223_ARATH (Putative pentatricopeptide repeat-containing protein At3g11460 OS=Arabidopsis thaliana GN=PCMP-H52 PE=3 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 1.154e-39
Identity = 85/201 (42.29%), Postives = 123/201 (61.19%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GALL AC+IH+ +++ ELA   + E +  ++GYYVL+ N+Y+ S   + + ++R +MRE+     PG S+VE KG VH FL+GD  H Q +E++ +L+    +   +  AG+  +  D+ E   +     HSE LA+AFG++N+ PG  I V KNL  C  CH  +K +SKIV R   VRD   FH+FKDG CSC D  YW
Sbjct:  430 GALLGACKIHKNVDMAELAFAKVIEFEPNNIGYYVLMSNIYSDSKNQEGIWRIRVMMRERAFRKKPGYSYVEHKGRVHLFLAGDRSHEQTEEVHRMLDEL--ETSVMELAGN--MDCDRGE-EVSSTTREHSERLAIAFGILNSIPGTEILVIKNLRVCEDCHVFLKQVSKIVDRQFVVRDASRFHYFKDGVCSCKD--YW 623          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP347_ARATH (Pentatricopeptide repeat-containing protein At4g33170 OS=Arabidopsis thaliana GN=PCMP-H53 PE=2 SV=1)

HSP 1 Score: 162.925 bits (411), Expect = 1.508e-39
Identity = 83/200 (41.50%), Postives = 115/200 (57.50%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LL ACR+    E G+  A  + E +      YVLL N+YAA+ KWDE+   R +M+   +  DPG SW+EVK ++H F+  D  + Q + I   ++     +K  G+   +++  +D  E  K      HSE LAVAFGL++T P  PI V KNL  C  CHN +K+I+K+  R+I +RD   FH FKDG CSCGD  YW
Sbjct:  793 LLAACRVQGDTETGKRVATKLLELEPLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIHIFVVDDRSNRQTELIYRKVKDMIRDIKQEGYVPETDFTLVDVEEEEKERALYYHSEKLAVAFGLLSTPPSTPIRVIKNLRVCGDCHNAMKYIAKVYNREIVLRDANRFHRFKDGICSCGD--YW 990          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP367_ARATH (Pentatricopeptide repeat-containing protein At5g06540 OS=Arabidopsis thaliana GN=PCMP-H88 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 79/203 (38.92%), Postives = 120/203 (59.11%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNF-HPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GALL AC+I++  E+ E     + +    H GYYVLL N+YA +G+WD++  +R +M+EK +   PG S +E+ G+++ F  GD+  HP++ +I    E    K++ +G+ G+   +  D  E  K      HSE LA+A+G++ T PG  I + KNL  C  CH   K IS++  R++ VRD   FHHF++G CSC D  YW
Sbjct:  422 GALLGACKIYKNTEVAERVGNMLIKVKPEHSGYYVLLSNIYACAGQWDKIESLRDMMKEKLVKKPPGWSLIEIDGKINKFTMGDDQKHPEMGKIRRKWEEILGKIRLIGYKGNTGDAFFDVDEEEKESSIHMHSEKLAIAYGMMKTKPGTTIRIVKNLRVCEDCHTVTKLISEVYGRELIVRDRNRFHHFRNGVCSCRD--YW 622          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP353_ARATH (Pentatricopeptide repeat-containing protein At4g37170 OS=Arabidopsis thaliana GN=PCMP-H5 PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.969e-39
Identity = 83/201 (41.29%), Postives = 118/201 (58.71%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            ++L  C  +  ++L E AA  +F+ +  +   YV + N+YAA+GKW+E  K+R+ M+E G+T  PG SW E+K + H F++ D  HP   +I   L    +KMK  G+   +  V  D  +  K E    HSE LAVAF +++T  G  I V KNL +C  CH  +KFIS I +R I VRD+  FH F++G CSCGD  YW
Sbjct:  493 SVLGGCSTYGNIDLAEEAAQELFKIEPENPVTYVTMANIYAAAGKWEEEGKMRKRMQEIGVTKRPGSSWTEIKRKRHVFIAADTSHPMYNQIVEFLRELRKKMKEEGYVPATSLVLHDVEDEQKEENLVYHSEKLAVAFAILSTEEGTAIKVFKNLRSCVDCHGAIKFISNITKRKITVRDSTRFHCFENGQCSCGD--YW 691          
The following BLAST results are available for this feature:
BLAST of CF832337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PP147_ARATH2.748e-4142.00Pentatricopeptide repeat-containing protein At2g03... [more]
PP364_ARATH3.589e-4142.08Pentatricopeptide repeat-containing protein At5g04... [more]
PP406_ARATH7.995e-4142.86Pentatricopeptide repeat-containing protein At5g39... [more]
PP312_ARATH7.995e-4144.55Pentatricopeptide repeat-containing protein At4g14... [more]
PP429_ARATH3.968e-4042.57Putative pentatricopeptide repeat-containing prote... [more]
PPR84_ARATH6.768e-4042.86Pentatricopeptide repeat-containing protein At1g56... [more]
PP223_ARATH1.154e-3942.29Putative pentatricopeptide repeat-containing prote... [more]
PP347_ARATH1.508e-3941.50Pentatricopeptide repeat-containing protein At4g33... [more]
PP367_ARATH1.969e-3938.92Pentatricopeptide repeat-containing protein At5g06... [more]
PP353_ARATH1.969e-3941.29Pentatricopeptide repeat-containing protein At4g37... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832337 ID=CF832337; Name=CF832337; organism=Citrus sinensis; type=EST; length=714bp
GGGAGCCTTACTAAATGCATGCAGGATTCATCGATGGCTTGAGCTTGGGG
AACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTAT
TACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGT
TGCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCG
GGTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGT
GACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATT
TTATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCA
TGGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAG
ATGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTAT
TTGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCA
AGTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAA
CATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTA
CTGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTC
TATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTGGTGAAAC
TTGTACACTTGGGC
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