CF832337

Overview
NameCF832337
Unique NameCF832337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP145_ARATH (Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2)

HSP 1 Score: 161.77 bits (408), Expect = 3.359e-39
Identity = 84/201 (41.79%), Postives = 114/201 (56.72%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG--SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LL AC  H  L+L E  +  IFE D  H G YV+L NLYA + KW+ V  +R++M+++     PGCS +EV   VH F SGD       +++  L+   +++K  G+    S  V  + ++  K      HSE LA+ FGL+NT PG  I V KNL  C  CHN  K IS I  R + +RD + FHHF+DG CSCGD  +W
Sbjct:  405 LLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVKELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVCRDCHNAAKLISLIFGRKVVLRDVQRFHHFEDGKCSCGD--FW 603          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP417_ARATH (Pentatricopeptide repeat-containing protein At5g44230 OS=Arabidopsis thaliana GN=PCMP-H17 PE=2 SV=1)

HSP 1 Score: 161.384 bits (407), Expect = 4.387e-39
Identity = 83/203 (40.89%), Postives = 119/203 (58.62%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSW-VEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GALL ACRIH   E+ E+AA H+FE +   +G Y+LL N+YA++G W  V +VR+L++EKGL   P  SW V+  G++H F  G+  HP   +I   LE   E++  +G+      V  D S+ +K  I   H+E LA+AF L+ T     I + KNL  C  CH  ++  S++  + I +RD   FHHF+ G CSCGD  +W
Sbjct:  457 GALLGACRIHNNPEIAEIAAEHLFELEPDIIGNYILLSNVYASAGDWGGVLRVRKLIKEKGLKKTPAVSWVVDKNGQMHKFFPGNLNHPMSNKIQDKLEELVERLTVLGYQPDLSSVPYDVSDNAKRLILIQHTEKLALAFSLLTTNRDSTITIMKNLRMCLDCHKFMRLASEVTGKVIIMRDNMRFHHFRSGDCSCGD--FW 657          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP330_ARATH (Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 84/202 (41.58%), Postives = 117/202 (57.92%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA---GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LL AC +H   +L E A   I + +  H G YVLL N+YA+  +W +V K+R+ M   G+   PG S VEV   VH FL GD  HPQ   I + L+    ++++ G+     + YV +++ E   A ++  HSE +A+AF LI+T    PI V KNL  C  CH  +K +SK+  R+I VRD   FHHFK+G+CSC D  YW
Sbjct:  398 LLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDVQKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYVPQISNVYVDVEEEEKENAVVY--HSEKIAIAFMLISTPERSPITVVKNLRVCADCHLAIKLVSKVYNREIVVRDRSRFHHFKNGSCSCQD--YW 595          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP249_ARATH (Pentatricopeptide repeat-containing protein At3g22690 OS=Arabidopsis thaliana GN=PCMP-H56 PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 5.729e-39
Identity = 81/201 (40.30%), Postives = 119/201 (59.20%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            +LL ACR+   +E+   AA  I        G YVLL N+YA++G+W+++AKVR  M+EKGL   PG S ++++G+ H F SGD  HP++  I ++L+   ++   +G       V MD  E  K  +   HSE LA+A+GLI++  G  I + KNL  C  CH+  KF SK+  R+I +RD   FH+ + G CSCGD  +W
Sbjct:  644 SLLAACRVQGNVEMAAYAAEKIQVLAPERTGSYVLLSNVYASAGRWNDMAKVRLSMKEKGLRKPPGTSSIQIRGKTHEFTSGDESHPEMPNIEAMLDEVSQRASHLGHVPDLSNVLMDVDEKEKIFMLSRHSEKLAMAYGLISSNKGTTIRIVKNLRVCSDCHSFAKFASKVYNREIILRDNNRFHYIRQGKCSCGD--FW 842          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP140_ARATH (Pentatricopeptide repeat-containing protein At2g01510, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H37 PE=2 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.276e-38
Identity = 89/206 (43.20%), Postives = 118/206 (57.28%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-----EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            GALL AC +HR + LG+  A  + ET      Y+VLL N+YAA+GKWD V KVR  MR+ G       S VE +G++H F  GD  HPQ K I   L+   +K++ +G+          V M++ E S +     HSE LA+AFGLI   PG PI V KNL TC  CH   KF+S +   +I +RD   FHHF++G CSC +  +W
Sbjct:  385 GALLGACAVHRDMILGQKVADVLVETAPDIGSYHVLLSNIYAAAGKWDCVDKVRSKMRKLGTKKVAAYSSVEFEGKIHFFNRGDKSHPQSKAIYEKLDEILKKIRKMGYVPDTCSVFHDVEMEEKECSLSH----HSEKLAIAFGLIKGRPGHPIRVMKNLRTCDDCHAFSKFVSSLTSTEIIMRDKNRFHHFRNGVCSCKE--FW 584          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP378_ARATH (Pentatricopeptide repeat-containing protein At5g13270, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H90 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 2.177e-38
Identity = 86/202 (42.57%), Postives = 117/202 (57.92%), Query Frame = 2
Query:   11 LNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAV-GFAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLIN---TAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            L+ C  H+ LELGE+A   + + D      YVL  NLY  +GKW+E A++ +LM E+ L  +  CSW++ KG++H F+ GD  HPQ +EI       YEK+K   GF   +    + +E  + E    HSE LA+AFGLI+    AP  PI V KNL  CP CH   K +S +   +I +RD+  FHHFK+G CSC D  YW
Sbjct:  563 LSGCWTHKNLELGEIAGEELRQLDPEDTAGYVLPFNLYTWAGKWEEAAEMMKLMNERMLKKELSCSWIQEKGKIHRFIVGDKHHPQTQEI-------YEKLKEFDGFMEGDMFQCNMTE--RREQLLDHSERLAIAFGLISVHGNAPA-PIKVFKNLRACPDCHEFAKHVSLVTGHEIVIRDSRRFHHFKEGKCSCND--YW 752          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP295_ARATH (Pentatricopeptide repeat-containing protein At3g62890 OS=Arabidopsis thaliana GN=PCMP-H82 PE=2 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.714e-38
Identity = 82/202 (40.59%), Postives = 121/202 (59.90%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            G+LL+  R+   ++  E A   + E D  + G YVLL N+YA +G+W EV  +R  M  KG+   PGCS+VEV+G VH F+ GD    + + I ++L+   ++++  G+   ++ V +D +E  K      HSE LA+AF L+ T PG P+ + KNL  C  CH  +K ISK+  R+I VRD   FHHF+DG+CSC D  +W
Sbjct:  374 GSLLSGSRMLGDIKTCEGALKRLIELDPMNSGAYVLLSNVYAKTGRWMEVKCIRHEMEVKGINKVPGCSYVEVEGVVHEFVVGDESQQESERIYAMLDEIMQRLREAGYVTDTKEVLLDLNEKDKEIALSYHSEKLAIAFCLMKTRPGTPVRIIKNLRICGDCHLVMKMISKLFSREIVVRDCNRFHHFRDGSCSCRD--FW 573          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP446_ARATH (Pentatricopeptide repeat-containing protein At5g65570 OS=Arabidopsis thaliana GN=PCMP-H47 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.850e-38
Identity = 79/201 (39.30%), Postives = 120/201 (59.70%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNF-HPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LL+AC++HR +E+ E     I E +    G  +L+ NLYA++GKW+ V +++  M++  L  +P  SWVE+  E H F++GD F HP  ++I   LE   +K K +G+      V  D  E +K      HSE LA+AF +     G  I + KNL  C  CH+ +K +S++++R+I  RD++ FHHF+DG+CSCGD  YW
Sbjct:  541 LLSACKVHRKVEMAERITRKILEIEPGDEGTLILMSNLYASTGKWNRVIEMKSKMKDMKLKKNPAMSWVEINKETHTFMAGDLFSHPNSEQILENLEELIKKSKDLGYVEDKSCVFQDMEETAKERSLHQHSEKLAIAFAVWRNVGG-SIRILKNLRVCVDCHSWIKIVSRVMKREIICRDSKRFHHFRDGSCSCGD--YW 738          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP428_ARATH (Pentatricopeptide repeat-containing protein At5g50990 OS=Arabidopsis thaliana GN=PCMP-H59 PE=2 SV=2)

HSP 1 Score: 157.918 bits (398), Expect = 4.850e-38
Identity = 83/201 (41.29%), Postives = 123/201 (61.19%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            +LL++ R ++  ELGE+A  ++ +  +   G YVLL N+Y+++ KW+   KVR LM ++G+    G SW+E  G +H F +GD  H + K I  VLEG  +K K+ GF   ++ V MD SE  K E    HSE LA+A+ ++ ++PG  I + KN+  C  CHN +K +SK++ R I +RD   FH F+DG CSC D  YW
Sbjct:  339 SLLSSSRTYKNPELGEIAIQNLSKAKS---GDYVLLSNIYSSTKKWESAQKVRELMSKEGIRKAKGKSWLEFGGMIHRFKAGDTSHIETKAIYKVLEGLIQKTKSQGFVSDTDLVLMDVSEEEKEENLNYHSEKLALAYVILKSSPGTEIRIQKNIRMCSDCHNWIKAVSKLLNRVIIMRDRIRFHRFEDGLCSCRD--YW 534          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP427_ARATH (Pentatricopeptide repeat-containing protein At5g50390, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H58 PE=2 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 4.850e-38
Identity = 81/205 (39.51%), Postives = 120/205 (58.54%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQI----KEINSVLEGFYEKMKAVGFAGSE-YVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            ALLNACR+   LELG + A  ++      +G YV++ N+Y + GK  E A V   +  KGL++ P C+WVEV  + H+FLSGD F        ++I   ++   E++   G++  E ++  D  E  +  +   HSE LA+A+GL+NT    P+ +T+N   C +CH  V+FIS +  R++ VRD   FHHFK+G CSCG  GYW
Sbjct:  499 ALLNACRMQENLELGRVVAEKLYGMGPEKLGNYVVMYNMYNSMGKTAEAAGVLETLESKGLSMMPACTWVEVGDQTHSFLSGDRFDSYNETVKRQIYQKVDELMEEISEYGYSEEEQHLLPDVDEKEEERVGRYHSEKLAIAYGLVNTPEWNPLQITQNHRICKNCHKVVEFISLVTGREMVVRDASRFHHFKEGKCSCG--GYW 701          
The following BLAST results are available for this feature:
BLAST of CF832337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PP145_ARATH3.359e-3941.79Pentatricopeptide repeat-containing protein At2g02... [more]
PP417_ARATH4.387e-3940.89Pentatricopeptide repeat-containing protein At5g44... [more]
PP330_ARATH5.729e-3941.58Pentatricopeptide repeat-containing protein At4g21... [more]
PP249_ARATH5.729e-3940.30Pentatricopeptide repeat-containing protein At3g22... [more]
PP140_ARATH1.276e-3843.20Pentatricopeptide repeat-containing protein At2g01... [more]
PP378_ARATH2.177e-3842.57Pentatricopeptide repeat-containing protein At5g13... [more]
PP295_ARATH3.714e-3840.59Pentatricopeptide repeat-containing protein At3g62... [more]
PP446_ARATH4.850e-3839.30Pentatricopeptide repeat-containing protein At5g65... [more]
PP428_ARATH4.850e-3841.29Pentatricopeptide repeat-containing protein At5g50... [more]
PP427_ARATH4.850e-3839.51Pentatricopeptide repeat-containing protein At5g50... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832337 ID=CF832337; Name=CF832337; organism=Citrus sinensis; type=EST; length=714bp
GGGAGCCTTACTAAATGCATGCAGGATTCATCGATGGCTTGAGCTTGGGG
AACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTAT
TACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGT
TGCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCG
GGTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGT
GACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATT
TTATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCA
TGGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAG
ATGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTAT
TTGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCA
AGTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAA
CATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTA
CTGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTC
TATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTGGTGAAAC
TTGTACACTTGGGC
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