CF832337

Overview
NameCF832337
Unique NameCF832337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PPR68_ARATH (Pentatricopeptide repeat-containing protein At1g31920 OS=Arabidopsis thaliana GN=PCMP-H11 PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 1.081e-37
Identity = 82/199 (41.21%), Postives = 117/199 (58.79%), Query Frame = 2
Query:   11 LNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGS-EYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            L+ CR+ + +ELG++AA  + +  + + G Y+L+ NLY+    WD+VA+ R  +  KGL   PG S VE+KG+ H F+S D  HP+ KEI  +L     ++K  G++     + ++  E  K E   GHS+ +A+AFGL+ T PG  I + +NL  C  CH   K IS I  R+I VRD   FH FK GTCSC D  YW
Sbjct:  410 LSQCRVRQNIELGQIAAQELLKLSSHNPGDYLLISNLYSQGQMWDDVARTRTEIAIKGLKQTPGFSIVELKGKTHRFVSQDRSHPKCKEIYKMLHQMEWQLKFEGYSPDLTQILLNVDEEEKKERLKGHSQKVAIAFGLLYTPPGSIIKIARNLRMCSDCHTYTKKISMIYEREIVVRDRNRFHLFKGGTCSCKD--YW 606          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP198_ARATH (Pentatricopeptide repeat-containing protein At2g41080 OS=Arabidopsis thaliana GN=PCMP-H29 PE=2 SV=2)

HSP 1 Score: 152.91 bits (385), Expect = 1.560e-36
Identity = 84/200 (42.00%), Postives = 112/200 (56.00%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LL+AC IH+  E+ +     I + D      YVLL N++A++ +W +V++VR+ MR+K +  + G SW E KGEVH F  GD    + KEI S L+    +MK  G+   +  V  D  E  K      HSE LAVAF L+    G PI + KNL  C  CH   K+IS I  R+I +RD   FHHF +G CSCGD  YW
Sbjct:  453 LLSACNIHKNAEMAQRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVRKSMRDKNVKKEAGISWFEHKGEVHQFKMGDRSQSKSKEIYSYLKELTLEMKLKGYKPDTASVLHDMDEEEKESDLVQHSEKLAVAFALMILPEGAPIRIIKNLRVCSDCHVAFKYISVIKNREITLRDGSRFHHFINGKCSCGD--YW 650          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PPR85_ARATH (Pentatricopeptide repeat-containing protein At1g59720, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H51 PE=2 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 2.038e-36
Identity = 87/211 (41.23%), Postives = 123/211 (58.29%), Query Frame = 2
Query:    5 ALLNAC-RIHRWLELGELAAGHIFETDTRHV-------GYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG--SEYVSMDKS-EASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            +LL+AC +    +EL E  A +I  T   +        G YVLL  +YA++ +W++V  VR+LM E G+  +PGCS +E+ G  H F +GD  HPQ K+I   L+   ++++++G+    S+   +D + + SK      HSE LA+AFGLIN  P  PI + KNL  C  CH   K ISK+   +I VRD   FHHFKDG+CSC D  YW
Sbjct:  430 SLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGAYVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQIYQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPIRIFKNLRVCNDCHEVTKLISKVFNTEIIVRDRVRFHHFKDGSCSCLD--YW 638          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP311_ARATH (Pentatricopeptide repeat-containing protein At4g14820 OS=Arabidopsis thaliana GN=PCMP-H3 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 2.661e-36
Identity = 85/210 (40.48%), Postives = 117/210 (55.71%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF---AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMP------IWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            G+L++ACRIH  LELG+ AA  I E +  H G  VL+ N+YA   +W++V  +RR+M EK +  + G S ++  G+ H FL GD  H Q  EI + L+    K+K  G+    GS  V +D  E  K ++   HSE LA+ FGL+N            I + KNL  C  CH   K +SK+  R+I VRD   FH +K+G CSC D  YW
Sbjct:  517 GSLMSACRIHGELELGKFAAKRILELEPDHDGALVLMSNIYAREQRWEDVRNIRRVMEEKNVFKEKGLSRIDQNGKSHEFLIGDKRHKQSNEIYAKLDEVVSKLKLAGYVPDCGS--VLVDVEEEEKKDLVLWHSEKLALCFGLMNEEKEEEKDSCGVIRIVKNLRVCEDCHLFFKLVSKVYEREIIVRDRTRFHCYKNGLCSCRD--YW 722          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP386_ARATH (Pentatricopeptide repeat-containing protein At5g15340, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H91 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.011e-35
Identity = 76/204 (37.25%), Postives = 111/204 (54.41%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEAS---KAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            G+LL +C +H  +E+ E     + +    +  Y +L+ N+Y A G+ D    +R  +R++G+   PG S + V   VH F SGD  HP+ KEI   L    E++++ G+       +  SE     K +  C HSE LAV FGL+ T P  P+ V KNL  C  CH+ +K +SK+  R+I +RD   FH FK G+CSC D  YW
Sbjct:  422 GSLLGSCSVHGKVEIAERIKRELIQMSPGNTEYQILMSNMYVAEGRSDIADGLRGSLRKRGIRKIPGLSSIYVNDSVHRFSSGDRSHPRTKEIYLKLNEVIERIRSAGYVPDVSGLVSHSEGDLEEKEQALCCHSEKLAVCFGLLETKPSTPLLVFKNLRICRDCHSAMKIVSKVYDREIIIRDRNRFHQFKGGSCSCSD--YW 623          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP373_ARATH (Putative pentatricopeptide repeat-containing protein At5g09950 OS=Arabidopsis thaliana GN=PCMP-H35 PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.253e-35
Identity = 80/198 (40.40%), Postives = 115/198 (58.08%), Query Frame = 2
Query:   20 CRIH-RWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGL-INTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            CR + R  ELG+ AA  +F+ +  +   YVLL N+YAA G+W+++ K R+ M++  +  + G SWV +K  VH F++GD  HP    I   L+    KM+  G+   + +   D  + +K EI   HSE LAVAF L    +  +PI + KNL  C  CH+  K+ISKI  R I +RD+  FHHF+DG CSC D  +W
Sbjct:  800 CRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKKEAGYSWVTMKDGVHMFVAGDKSHPDADVIYKKLKELNRKMRDAGYVPQTGFALYDLEQENKEEILSYHSEKLAVAFVLAAQRSSTLPIRIMKNLRVCGDCHSAFKYISKIEGRQIILRDSNRFHHFQDGACSCSD--FW 995          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP284_ARATH (Pentatricopeptide repeat-containing protein At3g56550 OS=Arabidopsis thaliana GN=PCMP-H80 PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 3.843e-35
Identity = 77/201 (38.31%), Postives = 110/201 (54.73%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA--GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            LL +C+IHR LELGE+A   + + +  + G YVL+ ++Y+A+      A +R+L+R   L   PG SW+E+  +VH F+  D  HP+   I S L     +    G+    S   +   S+         HSE LA+A+GL+ T  G  + +TKNL  C  CH+  K++SK   R+I VRD   FHHF DG CSC D  YW
Sbjct:  383 LLGSCKIHRNLELGEVAMKKLVQLEAFNAGDYVLMTSIYSAANDAQAFASMRKLIRSHDLQTVPGWSWIEIGDQVHKFVVDDKMHPESAVIYSELGEVINRAILAGYKPEDSNRTAPTLSDRCLGSADTSHSEKLAIAYGLMRTTAGTTLRITKNLRVCRDCHSFTKYVSKAFNREIIVRDRVRFHHFADGICSCND--YW 581          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PPR71_ARATH (Pentatricopeptide repeat-containing protein At1g34160 OS=Arabidopsis thaliana GN=PCMP-H68 PE=2 SV=2)

HSP 1 Score: 144.05 bits (362), Expect = 7.248e-34
Identity = 82/204 (40.20%), Postives = 113/204 (55.39%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF-AGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLI---NTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            +LL A  I+  +E+ E+A+  I E    + G +VLL N+YAA G+W +V +VR  M  K +   PG S++E KG +H F + D  H Q +EI   ++    K++  G+ A +  V  D  E  K    C HSE LAVA+GL+         P+ V  NL  C  CH   K ISKI +R+I VRD   FH FKDG+CSC D  +W
Sbjct:  380 SLLGASEIYSDVEMAEIASREIKEMGVNNDGDFVLLSNVYAAQGRWKDVGRVRDDMESKQVKKIPGLSYIEAKGTIHEFYNSDKSHEQWREIYEKIDEIRFKIREDGYVAQTGLVLHDIGEEEKENALCYHSEKLAVAYGLMMMDGADEESPVRVINNLRICGDCHVVFKHISKIYKREIIVRDRVRFHRFKDGSCSCRD--FW 581          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP377_ARATH (Putative pentatricopeptide repeat-containing protein At5g13230, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H89 PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.047e-32
Identity = 75/198 (37.88%), Postives = 109/198 (55.05%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFA-GSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGM-PIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGD 592
            A+L+A       E    +A  I + + +    YVL+ N+YA + +W  VA +R+ M+E G+  +PG SW+E +G+VH F  G + HP +K IN +LE    K    G+      V +D  +  K +    HSE LA+A+GL+        I + KNL  C  CH+ +K IS IV+RD+ +RD   FHHF  G CSCGD
Sbjct:  623 AMLSASMNQNNEEFARRSAEEILKINPKDEATYVLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIEHQGDVHYFSVGLSDHPDMKLINGMLEWLNMKATRAGYVPDRNAVLLDMDDEEKDKRLWVHSERLALAYGLVRMPSSRNRILIMKNLRICSDCHSAMKVISSIVQRDLVIRDMNRFHHFHAGVCSCGD 820          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP182_ARATH (Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.047e-32
Identity = 81/201 (40.30%), Postives = 111/201 (55.22%), Query Frame = 2
Query:    5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAG-SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            A+L AC++HR  +LG   A  +   +  + G++V+L N+YA SGK DEV+ +R  M    L    G S +EV+ + + F  GD  H +  EI   LE    + K +G+A  SE V     E  K      HSE LAVAFGL+ T   + I + KNL  C  CH+  K+IS +  R I VRD   FHHF++G+CSC D  YW
Sbjct:  386 AMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEEVMHQVEEEEKEFALRYHSEKLAVAFGLLKTV-DVAITIVKNLRICEDCHSAFKYISIVSNRQITVRDKLRFHHFQNGSCSCLD--YW 583          
The following BLAST results are available for this feature:
BLAST of CF832337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PPR68_ARATH1.081e-3741.21Pentatricopeptide repeat-containing protein At1g31... [more]
PP198_ARATH1.560e-3642.00Pentatricopeptide repeat-containing protein At2g41... [more]
PPR85_ARATH2.038e-3641.23Pentatricopeptide repeat-containing protein At1g59... [more]
PP311_ARATH2.661e-3640.48Pentatricopeptide repeat-containing protein At4g14... [more]
PP386_ARATH1.011e-3537.25Pentatricopeptide repeat-containing protein At5g15... [more]
PP373_ARATH2.253e-3540.40Putative pentatricopeptide repeat-containing prote... [more]
PP284_ARATH3.843e-3538.31Pentatricopeptide repeat-containing protein At3g56... [more]
PPR71_ARATH7.248e-3440.20Pentatricopeptide repeat-containing protein At1g34... [more]
PP377_ARATH1.047e-3237.88Putative pentatricopeptide repeat-containing prote... [more]
PP182_ARATH1.047e-3240.30Pentatricopeptide repeat-containing protein At2g33... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01L07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832337 ID=CF832337; Name=CF832337; organism=Citrus sinensis; type=EST; length=714bp
GGGAGCCTTACTAAATGCATGCAGGATTCATCGATGGCTTGAGCTTGGGG
AACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTAT
TACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGT
TGCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCG
GGTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGT
GACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATT
TTATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCA
TGGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAG
ATGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTAT
TTGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCA
AGTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAA
CATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTA
CTGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTC
TATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTGGTGAAAC
TTGTACACTTGGGC
back to top