CF832337

Overview
NameCF832337
Unique NameCF832337
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length714
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP430_ARATH (Pentatricopeptide repeat-containing protein At5g52850, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H31 PE=2 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.675e-22
Identity = 72/199 (36.18%), Postives = 96/199 (48.24%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFH-PQIKEINSVLEGFYEKMKAVG--FAGSEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDE 595
            LL ACR    L LGE  A             Y+LL +LY  SGK +   K R LM EK L+   G S VEV+G+VH+F+S D     +   I + +E   E++K  G  + G+E  S              HS   AV +G I  +P  P+ V KN   C  CH  V  ++++V + I VRD    H FK+G CSC  E
Sbjct:  703 LLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMTEKRLSKKLGKSTVEVQGKVHSFVSEDVTRVDKTNGIYAEIESIKEEIKRFGSPYRGNENASF-------------HSAKQAVVYGFIYASPEAPVHVVKNKILCKDCHEFVSILTRLVDKKITVRDGNQVHIFKNGECSCKRE 888          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PPR74_ARATH (Pentatricopeptide repeat-containing protein At1g47580, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H50 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 54/109 (49.54%), Postives = 68/109 (62.39%), Query Frame = 2
Query:  302 YEKMKAVGF----AG----SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            Y K+K++G     AG    ++YV  D  E +K +    HSE LA+AFG+INT PG  I V KNL  C  CHN +K +S I  R+I VRD + FHHF+DG CSCGD  YW
Sbjct:  133 YVKLKSLGKEVRDAGYVPETKYVLHDIDEEAKEKALMHHSERLAIAFGIINTPPGTTIRVMKNLRICGDCHNFIKILSSIEDREIIVRDNKRFHHFRDGNCSCGD--YW 239          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP151_ARATH (Pentatricopeptide repeat-containing protein At2g13600 OS=Arabidopsis thaliana GN=PCMP-E76 PE=2 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.418e-21
Identity = 45/105 (42.86%), Postives = 72/105 (68.57%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 316
            G+LL AC++HR + LG+  A  + E +  + G YVLL N+YA  GKW++V  VR+ MR++G+T  PGCSW++++G  H F+  D  HP+ K+I+S+L+    +M+
Sbjct:  565 GSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNVRKSMRKEGVTKQPGCSWIKIQGHDHVFMVKDKSHPRKKQIHSLLDILIAEMR 669          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP435_ARATH (Putative pentatricopeptide repeat-containing protein At5g59200, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E41 PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 1.568e-20
Identity = 48/104 (46.15%), Postives = 68/104 (65.38%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHP-------QIKEINSVL 292
            G LL+AC+IH  +ELGE  A  +FE++    G YVLL NLYA+SGKW E  ++R  MR+ G+  +PGCS +EV  ++H FL GD  HP       +++E+N +L
Sbjct:  428 GTLLSACKIHGNMELGEKIAKRLFESENPDSGTYVLLSNLYASSGKWKESTEIRESMRDSGIEKEPGCSTIEVDNQIHEFLVGDIAHPHKEAIYQRLQELNRIL 531          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP333_ARATH (Pentatricopeptide repeat-containing protein At4g21300 OS=Arabidopsis thaliana GN=PCMP-E36 PE=2 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 45/124 (36.29%), Postives = 73/124 (58.87%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASK 373
            G LL ACR+H+ +EL E+A+  + + D  + GYYVL+ N +A + +W+ V KVR LM+E+ +   PG SW+E+    H F+SGD  HP+   I S+L     +++  G+    Y+ +    + K
Sbjct:  716 GTLLGACRLHKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYSWIEINKRTHLFVSGDVNHPESSHIYSLLNSLLGELRLEGYIPQPYLPLHPESSRK 839          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP185_ARATH (Pentatricopeptide repeat-containing protein At2g35030, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E15 PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 4.561e-20
Identity = 48/122 (39.34%), Postives = 74/122 (60.66%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEA 367
            GA+L+AC +H  + + +     + ET +   G YVL+ N+YAA+GK +E A++R  M+EKGL   PGCSWV+V  + H F+ GD  HPQ + ++S+L     KM+      ++ V+ D  EA
Sbjct:  506 GAILSACNVHNEVSIAKEVVKKVLETGSDDAGTYVLMSNIYAANGKREEAAEMRMKMKEKGLKKQPGCSWVKVGKQNHLFVVGDKSHPQFEALDSILSDLRNKMRK-----NKNVTSDAEEA 622          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP170_ARATH (Pentatricopeptide repeat-containing protein At2g25580 OS=Arabidopsis thaliana GN=PCMP-H75 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.733e-19
Identity = 65/204 (31.86%), Postives = 96/204 (47.06%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASG----KWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            L+N  R+H  LELG+  A  +   D   +       N  +  G    K  +V K   L +  G+          VK  +  F +GD   P+  E+  +L      M  VG+     +++ D  + SK  +  GHSE +A A  ++N+AP  P  V KNL  C  CHN +K +S IV R++  RD + FH  K+G C+C D  YW
Sbjct:  429 LMNLSRVHGNLELGDYCAEVVEFLDPTRL-------NKQSREGFIPVKASDVEK-ESLKKRSGILHG-------VKSSMQEFRAGDTNLPENDELFQLLRNLKMHMVEVGYVAETRMALHDIDQESKETLLLGHSERIAFARAVLNSAPRKPFTVIKNLRVCVDCHNALKIMSDIVGREVITRDIKRFHQMKNGACTCKD--YW 615          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP153_ARATH (Pentatricopeptide repeat-containing protein At2g15690 OS=Arabidopsis thaliana GN=PCMP-H66 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.916e-18
Identity = 42/90 (46.67%), Postives = 57/90 (63.33%), Query Frame = 2
Query:  335 SEYVSMDKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604
            + +V  D  + +K +    HSE LA+A+G+I T P   + + KNL  C  CHN +K +SKI+ R + VRD + FHHFKDG CSCGD  YW
Sbjct:  492 TRFVLHDIDQEAKEQALLYHSERLAIAYGIICTPPRKTLTIIKNLRVCGDCHNFIKIMSKIIGRVLIVRDNKRFHHFKDGKCSCGD--YW 579          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP116_ARATH (Pentatricopeptide repeat-containing protein At1g71490 OS=Arabidopsis thaliana GN=PCMP-E67 PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.269e-18
Identity = 45/118 (38.14%), Postives = 70/118 (59.32%), Query Frame = 2
Query:    8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK-AVGFAGSEYVSMDK 358
            LLNAC IH   ++G+ AA  + E    + GYYVL+ N+YAA+G W ++A+VR +MR+ G+  DPGC+W++       F  GD   P+      +L+G  + MK   G+A ++  S D+
Sbjct:  557 LLNACHIHGNTQIGKWAAEKLLEMKPENPGYYVLIANMYAAAGSWSKLAEVRTIMRDLGVKKDPGCAWIDTDSGFSLFSVGDTSSPEACNTYPLLDGLNQLMKDNAGYAINKVQSSDE 674          
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP370_ARATH (Putative pentatricopeptide repeat-containing protein At5g08490 OS=Arabidopsis thaliana GN=PCMP-E32 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.119e-17
Identity = 40/105 (38.10%), Postives = 64/105 (60.95%), Query Frame = 2
Query:    2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 316
            G LL AC  +  ++LG   A H+ + ++   G +VL+ N+YAA  KW+ V ++R LM++K +    GCSW+EV G+ + F+SGD  HP+   I  ++   Y +MK
Sbjct:  740 GTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLISNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVDGQRNVFVSGDCSHPRRDSIFDLVNALYLQMK 844          
The following BLAST results are available for this feature:
BLAST of CF832337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 138
Match NameE-valueIdentityDescription
PP430_ARATH1.675e-2236.18Pentatricopeptide repeat-containing protein At5g52... [more]
PPR74_ARATH1.418e-2149.54Pentatricopeptide repeat-containing protein At1g47... [more]
PP151_ARATH1.418e-2142.86Pentatricopeptide repeat-containing protein At2g13... [more]
PP435_ARATH1.568e-2046.15Putative pentatricopeptide repeat-containing prote... [more]
PP333_ARATH2.674e-2036.29Pentatricopeptide repeat-containing protein At4g21... [more]
PP185_ARATH4.561e-2039.34Pentatricopeptide repeat-containing protein At2g35... [more]
PP170_ARATH1.733e-1931.86Pentatricopeptide repeat-containing protein At2g25... [more]
PP153_ARATH1.916e-1846.67Pentatricopeptide repeat-containing protein At2g15... [more]
PP116_ARATH4.269e-1838.14Pentatricopeptide repeat-containing protein At1g71... [more]
PP370_ARATH2.119e-1738.10Putative pentatricopeptide repeat-containing prote... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionUCRCS02_01L07_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832337 ID=CF832337; Name=CF832337; organism=Citrus sinensis; type=EST; length=714bp
GGGAGCCTTACTAAATGCATGCAGGATTCATCGATGGCTTGAGCTTGGGG
AACTTGCGGCTGGACATATTTTTGAAACTGATACGAGACATGTTGGGTAT
TACGTTCTCTTGTGTAATCTCTATGCTGCAAGTGGGAAATGGGATGAAGT
TGCAAAAGTAAGAAGGTTGATGAGAGAGAAAGGGTTGACTATTGATCCCG
GGTGCAGTTGGGTGGAAGTGAAAGGAGAAGTTCATGCTTTCCTTAGTGGT
GACAATTTCCACCCTCAAATAAAGGAAATAAATTCAGTTTTGGAGGGATT
TTATGAGAAAATGAAAGCAGTTGGTTTTGCTGGTTCAGAATATGTGTCCA
TGGACAAAAGTGAAGCTTCAAAAGCTGAGATCTTTTGTGGTCACAGTGAG
ATGTTGGCTGTGGCATTTGGCCTCATAAATACTGCCCCGGGGATGCCTAT
TTGGGTTACAAAGAATCTCTATACATGCCCAAGTTGTCACAACACTGTCA
AGTTCATCTCCAAGATTGTACGCAGAGACATTTTTGTTAGGGATACTGAA
CATTTTCACCACTTCAAGGATGGAACCTGCTCTTGTGGTGATGAGGGTTA
CTGGGGAAGACTAGACAGGTCAGAGAGCTAAAGATTTTTTTTAAGCATTC
TATAACTTGTACAAAAATACAGGATGAGAGTTTCAGGGTTGTGGTGAAAC
TTGTACACTTGGGC
back to top