CF832337
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP207_ARATH (Pentatricopeptide repeat-containing protein At3g02330 OS=Arabidopsis thaliana GN=PCMP-E90 PE=2 SV=2) HSP 1 Score: 88.1965 bits (217), Expect = 4.720e-17 Identity = 51/128 (39.84%), Postives = 70/128 (54.69%), Query Frame = 2 Query: 8 LLNACRIHRW-LELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMDKSEASKAEIFC 388 LL C IHR +E+ E A + D + Y LL N+YA +G W++V+ +RR MR L +PGCSWVE+K E+H FL GD HP+ +EI L Y +MK F S +V + E +C Sbjct: 778 LLGVCTIHRNNVEVAEEATAALLRLDPQDSSAYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELKDELHVFLVGDKAHPRWEEIYEELGLIYSEMKP--FDDSSFVRGVEVEEEDQWCYC 903
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP231_ARATH (Pentatricopeptide repeat-containing protein At3g14730 OS=Arabidopsis thaliana GN=PCMP-E31 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17 Identity = 42/117 (35.90%), Postives = 68/117 (58.12%), Query Frame = 2 Query: 5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSMD 355 ++L++CR+H +L +A + E + H G YVL+ N+Y +GK++EV VR MR++ + PGCSW+ +K VH F +G+ HP+ K I+ L M G EY+++D Sbjct: 541 SILSSCRLHGNKDLALVAGKRLHELEPEHCGGYVLMSNVYVEAGKYEEVLDVRDAMRQQNVKKTPGCSWIVLKNGVHTFFTGNQTHPEFKSIHDWLSLVISHMH-----GHEYMTVD 652
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP220_ARATH (Pentatricopeptide repeat-containing protein At3g09040, mitochondrial OS=Arabidopsis thaliana GN=PCMP-E88 PE=2 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 8.051e-17 Identity = 41/104 (39.42%), Postives = 65/104 (62.50%), Query Frame = 2 Query: 5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 316 +LL ACRIH GE++A + E + ++ YVLL N+YA+ G W++ +R++MR++G+ PG SW++V+ H F +GD H +I +I LE Y+ MK Sbjct: 907 SLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKANALRKVMRDRGVKKVPGYSWIDVEQRTHIFAAGDKSHSEIGKIEMFLEDLYDLMK 1010
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP246_ARATH (Pentatricopeptide repeat-containing protein At3g22150, chloroplastic OS=Arabidopsis thaliana GN=PCMP-E95 PE=2 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16 Identity = 47/111 (42.34%), Postives = 64/111 (57.66%), Query Frame = 2 Query: 2 GALLNACRIHRWLELGELAAGHI--FETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF 328 G+LL +C++H LEL E + + F+ GY VLL N+YA KW V KVRR MREKGL + G S +E+ G V+ F+S D HP EI V++G + M+ F Sbjct: 695 GSLLGSCKLHGELELAETVSERLAKFDKGKNFSGYEVLLSNMYAEEQKWKSVDKVRRGMREKGLKKEVGRSGIEIAGYVNCFVSRDQEHPHSSEIYDVIDGLAKDMRGDSF 805
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PPR75_ARATH (Pentatricopeptide repeat-containing protein At1g50270 OS=Arabidopsis thaliana GN=PCMP-E42 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16 Identity = 38/88 (43.18%), Postives = 57/88 (64.77%), Query Frame = 2 Query: 2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHP 265 GAL +C +H+ ELG+ AA + + H G Y LL NLY+ S WDEVA+VR+ M+++ + PG SW+EVKG++ F++ D+ P Sbjct: 479 GALFGSCLLHKDYELGKYAASRVIKLQPSHSGRYTLLANLYSESQNWDEVARVRKQMKDQQVVKSPGFSWIEVKGKLCEFIAFDDKKP 566
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP431_ARATH (Pentatricopeptide repeat-containing protein At5g55740, chloroplastic OS=Arabidopsis thaliana GN=CRR21 PE=2 SV=1) HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16 Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 2 Query: 5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGE--VHAFLSGDNFHPQIKEINSVL 292 +L+ +C R EL + + + E++ + G YV + N YA G WDEV K+R +M+ KGL PGCSW+++ GE VH F++ D H +I EI +L Sbjct: 721 SLVASCNKQRKTELVDYLSRKLLESEPENSGNYVTISNAYAVEGSWDEVVKMREMMKAKGLKKKPGCSWIQITGEEGVHVFVANDKTHTRINEIQMML 818
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP205_ARATH (Putative pentatricopeptide repeat-containing protein At3g01580 OS=Arabidopsis thaliana GN=PCMP-E87 PE=3 SV=2) HSP 1 Score: 84.3445 bits (207), Expect = 6.815e-16 Identity = 37/105 (35.24%), Postives = 64/105 (60.95%), Query Frame = 2 Query: 2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMK 316 G LL ACRIH+ E+ E A +FE ++ H GYY+L+ N+Y G+W+ V K+R ++++G+ S +E++ +VH F++ D HP+ + + +L+ MK Sbjct: 540 GTLLGACRIHQNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEIRRKVHRFVADDELHPEKEPVYGLLKELDLHMK 644
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP346_ARATH (Pentatricopeptide repeat-containing protein At4g32450, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H63 PE=2 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 8.901e-16 Identity = 59/200 (29.50%), Postives = 93/200 (46.50%), Query Frame = 2 Query: 8 LLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGFAGSEYVSM-DKSEASKAEIFCGHSEMLAVAFGLINTAPGMPIWVTKNLYTCPSCHNTVKFISKIVRRDIFVRDTEHFHHFKDGTCSCGDEGYW 604 L+N R+H L LG+ + + D + N + +G K L++EK + G ++ + +GD P+ +E+ L+ E M +G+ +++ D + SK E H+E A ++T I V KNL C CHN +K +SKIV R++ RD + FHH KDG CSC + YW Sbjct: 354 LMNLSRVHGDLILGDRCQDMVEQLDASRL-------NKESKAGLVP--VKSSDLVKEKLQRMAKGPNY-----GIRYMAAGDISRPENRELYMALKSLKEHMIEIGYVPLSKLALHDVDQESKDENLFNHNERFAFISTFLDTPARSLIRVMKNLRVCADCHNALKLMSKIVGRELISRDAKRFHHMKDGVCSCRE--YW 537
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PPR70_ARATH (Pentatricopeptide repeat-containing protein At1g33350 OS=Arabidopsis thaliana GN=PCMP-E57 PE=2 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15 Identity = 36/98 (36.73%), Postives = 59/98 (60.20%), Query Frame = 2 Query: 2 GALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLE 295 G+LLNAC+IH L+L E+A ++ + + GY ++ NLY G W+E + R++++ + PG S +E+ EVH F S D HP+ +EI +L+ Sbjct: 436 GSLLNACKIHGHLDLAEVAVKNLVALNPNNGGYVAMMANLYGEMGNWEEARRARKMIKHQNAYKPPGWSRIEIDNEVHQFYSLDKSHPETEEIYMILD 533
BLAST of CF832337 vs. ExPASy Swiss-Prot
Match: PP215_ARATH (Pentatricopeptide repeat-containing protein At3g05340 OS=Arabidopsis thaliana GN=PCMP-E83 PE=2 SV=2) HSP 1 Score: 82.0333 bits (201), Expect = 3.382e-15 Identity = 40/108 (37.04%), Postives = 62/108 (57.41%), Query Frame = 2 Query: 5 ALLNACRIHRWLELGELAAGHIFETDTRHVGYYVLLCNLYAASGKWDEVAKVRRLMREKGLTIDPGCSWVEVKGEVHAFLSGDNFHPQIKEINSVLEGFYEKMKAVGF 328 ALL AC H E+GE AA +F+T ++L+ N+Y++ GKW E AK + M+ G+T + G S +E++ + H+F+ D HPQ + I VL G + M G+ Sbjct: 531 ALLGACSFHGDTEVGEYAAEQLFQTAPDSSSAHILIANIYSSRGKWKERAKTIKRMKAMGVTKETGISSIEIEHKTHSFVVEDKLHPQAEAIYDVLSGLFPVMVDEGY 638 The following BLAST results are available for this feature:
BLAST of CF832337 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 138
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Sequences
The
following sequences are available for this feature:
EST sequence >CF832337 ID=CF832337; Name=CF832337; organism=Citrus sinensis; type=EST; length=714bpback to top |