CF832341

Overview
NameCF832341
Unique NameCF832341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:88..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10B_SCHPO (60S ribosomal protein L10-B OS=Schizosaccharomyces pombe GN=rpl10b PE=2 SV=1)

HSP 1 Score: 237.269 bits (604), Expect = 4.143e-62
Identity = 114/175 (65.14%), Postives = 139/175 (79.43%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLL 565
            +PD KIRI+D+G K+ G D+FP C+HLVS E E  +SEALEAARI  NKY+    GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQVL+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L
Sbjct:   26 VPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10A_SCHPO (60S ribosomal protein L10-A OS=Schizosaccharomyces pombe GN=rpl10a PE=2 SV=2)

HSP 1 Score: 236.884 bits (603), Expect = 5.411e-62
Identity = 113/175 (64.57%), Postives = 139/175 (79.43%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLL 565
            +PD KIRI+D+G K+ G D+FP C+HLVS E E  +SEALEAARI  NKY+    GKD+FHLRVR HPFHV+RINKMLSCAGADRLQTGMR AFGKP G  ARV IGQ+L+SVR KDS+   A EALRR ++KFPG+Q+IIVS+KWGF++++R +Y+  +S   I+PDG  AK L
Sbjct:   26 VPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVKIGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTKDSSRATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKFL 200          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_YEAST (60S ribosomal protein L10 OS=Saccharomyces cerevisiae GN=RPL10 PE=1 SV=1)

HSP 1 Score: 234.187 bits (596), Expect = 3.507e-61
Identity = 115/175 (65.71%), Postives = 133/175 (76.00%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLL 565
            +PD KIRIYD+G KK   D+FP CVHLVS E E  SSEALEAARI  NKYM + +G+DAFHLRVRVHPFHVLRINKMLSCAGADRLQ GMRGA+GKP G  ARV IGQ++ SVR KDSN     E LRRA++KFPG+QKII+S+KWGFT   R +YL+ +    +  DG   K L
Sbjct:   26 VPDSKIRIYDLGKKKATVDEFPLCVHLVSNELEQLSSEALEAARICANKYMTTVSGRDAFHLRVRVHPFHVLRINKMLSCAGADRLQQGMRGAWGKPHGLAARVDIGQIIFSVRTKDSNKDVVVEGLRRARYKFPGQQKIILSKKWGFTNLDRPEYLKKREAGEVKDDGAFVKFL 200          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10L_HUMAN (60S ribosomal protein L10-like OS=Homo sapiens GN=RPL10L PE=1 SV=3)

HSP 1 Score: 234.187 bits (596), Expect = 3.507e-61
Identity = 114/182 (62.64%), Postives = 136/182 (74.73%), Query Frame = 2
Query:   29 FAAVLPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLLGCH 574
            F   +PD KIRI+D+G KK   D+FP   H+VS E E  SSEALEAARI  NKYM    G+D FH+RVR+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQV++S+R K  N  H  EALRRAKFKFPGRQKI +S+KWGFTKF+  ++    ++  ++PDG   K +  H
Sbjct:   22 FCRGVPDAKIRIFDLGRKKAKVDEFPLGGHMVSDEYEQLSSEALEAARICANKYMVKSCGRDGFHMRVRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVHIGQVIMSIRTKLQNEEHVIEALRRAKFKFPGRQKIHISKKWGFTKFNADEFEDMVAKKCLIPDGCGVKYVPSH 203          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_EUGGR (60S ribosomal protein L10 OS=Euglena gracilis GN=RPL10 PE=2 SV=1)

HSP 1 Score: 214.927 bits (546), Expect = 2.202e-55
Identity = 105/175 (60.00%), Postives = 126/175 (72.00%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDGVNAKLL 565
            +P+ KIRIYD GM+K  AD FP   HL+S E+E   SEALEAARI  NKYM  +AGK+A+H+RVRVHPFHV RINKMLSCAGADRLQ GMRGAFGKP G  ARV IGQ L+S+R K  +      AL+RA +KF GRQ I  S  WGFT+    +Y++WK E +   DGV+ K+L
Sbjct:   26 VPEAKIRIYDCGMRKLNADTFPLTYHLISMEREQIGSEALEAARINANKYMIKNAGKEAYHIRVRVHPFHVCRINKMLSCAGADRLQQGMRGAFGKPNGLAARVRIGQPLMSIRVKPQHEAVVVAALKRASYKFAGRQVIAKSTMWGFTEIRSENYVKWKEEGKFRVDGVSTKIL 200          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_ENCCU (60S ribosomal protein L10 OS=Encephalitozoon cuniculi GN=RPL10 PE=1 SV=1)

HSP 1 Score: 199.904 bits (507), Expect = 7.330e-51
Identity = 102/169 (60.36%), Postives = 123/169 (72.78%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRKWGFTKFSRADYLRWKSENRIVPDG 547
            +PD KI+I+D+G +K G  +FP  V+ +S E+EN S+EALEAARI  NKYM   AGKD FHLR+RV+PFHVLRINKMLSCAGADRLQTGMRG+FGKP G  ARV   Q +LS+R K+S    A EALRRAK KFPG QKI VS K+GFT     ++ +     RI+  G
Sbjct:   26 VPDSKIQIFDLGRRKAGVLEFPLLVNCISNERENLSAEALEAARICANKYMVKHAGKDNFHLRIRVYPFHVLRINKMLSCAGADRLQTGMRGSFGKPYGRAARVVFNQPILSIRTKESFRDAAVEALRRAKNKFPGHQKIQVSSKFGFTNMFSDEFNKLNESGRIILRG 194          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_METKA (50S ribosomal protein L10e OS=Methanopyrus kandleri GN=rpl10e PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.217e-29
Identity = 70/144 (48.61%), Postives = 93/144 (64.58%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +PDPKI+ +D+G     A  F   V LV+ E+   +  ALEAAR+A N+Y+    G+  +HL++RV+P HVLR N + + AGADR+Q GMR AFGKP GT ARV  GQ +++VR    N  HA EALRRA  KFP    I+V +
Sbjct:   26 VPDPKIQQFDMG---NPAGDFDVEVSLVARERAQVTHNALEAARVAANRYLTKTVGRQNYHLKIRVYPHHVLRENPLATGAGADRVQEGMRLAFGKPIGTAARVREGQRVVTVRIDPENFEHAKEALRRAGMKFPFPFTIVVDK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_AERPE (50S ribosomal protein L10e OS=Aeropyrum pernix GN=rpl10e PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 3.663e-26
Identity = 65/142 (45.77%), Postives = 89/142 (62.68%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIV 466
            +P PKI  +++G ++   +++     LV  E       ALEAARIA NKY+A+  G   F+ R+RV+P HV+R NKM++ AGADRLQ GMR AFGKP GT ARV  G V+L V  +  +  +  EALRR   KFP   +I++
Sbjct:   26 VPPPKITRFEMGNREM-MEKWEIKGELVMLEAGQIRHNALEAARIAVNKYLATTIGDKNFYFRIRVYPHHVIRENKMMAFAGADRLQDGMRQAFGKPVGTAARVYPGTVVLEVWARKGDEENVKEALRRGASKFPLPSRIVI 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_STAMF (50S ribosomal protein L10e OS=Staphylothermus marinus (strain ATCC 43588 / DSM 3639 / F1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.066e-25
Identity = 65/141 (46.10%), Postives = 86/141 (60.99%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKII 463
            +P PKI  +++G      D   +   LV  E       ALEAAR+  NKY++S  G   + L++RV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  G +++ VR +  +  HA EALRRA  K P   +I+
Sbjct:   26 VPQPKIVKFEMGNVHGDYD---YRAELVMIEAGQIRHNALEAARVMANKYLSSTVGDQNYFLKIRVYPHHVLRENKMMAFAGADRLQDGMRQAFGKPIGTAARVYPGTIVMEVRVRKEHVEHAKEALRRAASKLPLPARIV 163          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_HYPBU (50S ribosomal protein L10e OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 1.818e-25
Identity = 67/143 (46.85%), Postives = 88/143 (61.54%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRR--AKFKFPGRQKII 463
            +P PKI+ + +G      D   + V +   E+      ALEAAR+A +KY+++  G   +  RVRV+P HVLR NKM++ AGADRLQ GMR AFGKP GT ARV  GQ +L VR K  +  HA EALRR  +K   P R ++I
Sbjct:   31 VPPPKIQKFVMGNPHGDYD---YIVEVYVTERGQIRHNALEAARVAVHKYLSTTIGDQNYFFRVRVYPHHVLRENKMMAFAGADRLQEGMRQAFGKPVGTAARVYPGQAVLEVRVKKEHLDHAKEALRRGASKLPLPSRIRVI 170          
The following BLAST results are available for this feature:
BLAST of CF832341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10B_SCHPO4.143e-6265.1460S ribosomal protein L10-B OS=Schizosaccharomyces... [more]
RL10A_SCHPO5.411e-6264.5760S ribosomal protein L10-A OS=Schizosaccharomyces... [more]
RL10_YEAST3.507e-6165.7160S ribosomal protein L10 OS=Saccharomyces cerevis... [more]
RL10L_HUMAN3.507e-6162.6460S ribosomal protein L10-like OS=Homo sapiens GN=... [more]
RL10_EUGGR2.202e-5560.0060S ribosomal protein L10 OS=Euglena gracilis GN=R... [more]
RL10_ENCCU7.330e-5160.3660S ribosomal protein L10 OS=Encephalitozoon cunic... [more]
RL10_METKA1.217e-2948.6150S ribosomal protein L10e OS=Methanopyrus kandler... [more]
RL10_AERPE3.663e-2645.7750S ribosomal protein L10e OS=Aeropyrum pernix GN=... [more]
RL10_STAMF1.066e-2546.1050S ribosomal protein L10e OS=Staphylothermus mari... [more]
RL10_HYPBU1.818e-2546.8550S ribosomal protein L10e OS=Hyperthermus butylic... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832341 ID=CF832341; Name=CF832341; organism=Citrus sinensis; type=EST; length=574bp
AGAACGAACCCTACCCTAAGTCCCGCATTTTGCCGCGGTGCTCCCCGATC
CCAAGATCAGAATCTACGATGTCGGGATGAAGAAGAAAGGCGCCGACCAG
TTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAGAAGGAGAACGAGTCGAG
CGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAACAAGTACATGGCCTCGG
ACGCTGGCAAGGATGCTTTCCATTTGCGAGTGAGGGTGCACCCCTTCCAT
GTTCTGCGCATTAACAAGATGCTTTCGTGTGCTGGGGCTGATCGGCTCCA
GACTGGAATGAGGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTG
TTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGC
CACCATGCTCATGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGGCG
TCAAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTG
CTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGCGTG
AATGCCAAGCTTCTCGGATGTCAT
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