CF832341

Overview
NameCF832341
Unique NameCF832341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:88..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_ARCFU (50S ribosomal protein L10e OS=Archaeoglobus fulgidus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 1.539e-24
Identity = 64/143 (44.76%), Postives = 86/143 (60.14%), Query Frame = 2
Query:   44 PDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            P  ++R++D+G   K AD FP  + LV+ E       ALEAAR+  NKY++  AG   + L++R+ P H+LR +KM   AGADR+  GMR AFGKP G  ARV  G  ++SV  K  +   A EALRRA  K P   KI+V +
Sbjct:   26 PGTRVRMFDMG--NKSAD-FPVMLTLVAKEAVQIRENALEAARVVANKYVSRRAGASNYKLKLRIFPHHILREHKMAVGAGADRISQGMRAAFGKPVGRAARVKPGTKIMSVWVKPEHFEIAKEALRRAAMKMPTPTKIVVEK 165          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_METTH (50S ribosomal protein L10e OS=Methanobacterium thermoautotrophicum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 7.639e-24
Identity = 61/144 (42.36%), Postives = 84/144 (58.33%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +P  KI  YD+G       +FP  + +        +  ALEAARIA N+YM   AG+  +HL++RV+P H++R N M + AGADR+Q GMR AFGKP  T A V   Q ++++     N   A EALRRA  KFP   +I++ R
Sbjct:   14 IPGSKIVQYDMGNLSA---EFPISLSVAVKAPTQITHNALEAARIASNRYMQRRAGRMGYHLKIRVYPHHIVRENPMATGAGADRVQDGMRKAFGKPVSTVALVKKNQKIITIETNKKNFKDAKEALRRAAMKFPVPCRIVIDR 154          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_META3 (50S ribosomal protein L10e OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.303e-23
Identity = 64/148 (43.24%), Postives = 85/148 (57.43%), Query Frame = 2
Query:   29 FAAVLPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +   +P PK+  Y  G   KG D FP  VHLV  +       ALE+ARI  NKY  +  G+  +  ++RV+P  VLR NKM S AGADR+  GMR +FGK  GT ARV  GQ ++++     N  HA EALRR   K P + KI++ +
Sbjct:   22 YIRAVPQPKVVHYVNG--NKGGD-FPVEVHLVVKDDIQIRHNALESARIVGNKYTQNKCGRLGYKFQIRVYPHQVLRENKMASGAGADRISDGMRLSFGKAVGTAARVRKGQKIITISTTPENVIHAKEALRRCNMKMPVKCKIVIGK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_THEVO (50S ribosomal protein L10e OS=Thermoplasma volcanium GN=rpl10e PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.103e-22
Identity = 58/148 (39.19%), Postives = 89/148 (60.14%), Query Frame = 2
Query:   29 FAAVLPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            F   +P PKI  +  G +K+    FP  + L++ E       ALEAAR++ N+ M   AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++H    AL++A  K P   K+++++
Sbjct:   22 FMGGVPYPKITTFVQGNQKR---DFPIEMQLIAMESCQVRHTALEAARVSVNRRMTEAAGLDNFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYQNDVIMIGRTDEAHAHELKIALKKAAIKLPTPCKVVITK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_THEPD (50S ribosomal protein L10e OS=Thermofilum pendens (strain Hrk 5) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.441e-22
Identity = 64/143 (44.76%), Postives = 81/143 (56.64%), Query Frame = 2
Query:   44 PDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            P   I  +D+G  K     F   + LV        + ALEAAR   NKY+ +  G+  F LRV V P H+LR NKM++ AGADRLQ GMR +FG P G  ARV  GQ+++ V+    N  HA EALRRA  K P   +IIV +
Sbjct:   27 PPVLIPKFDLGNPK---GNFNTVLKLVVMRPGQIRANALEAARQHANKYLTAKVGEANFFLRVAVFPHHILRENKMMAMAGADRLQDGMRLSFGTPVGRAARVEAGQIVMLVKVDAKNIDHAKEALRRAASKIPLPSRIIVEQ 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_THEAC (50S ribosomal protein L10e OS=Thermoplasma acidophilum GN=rpl10e PE=3 SV=2)

HSP 1 Score: 105.531 bits (262), Expect = 1.881e-22
Identity = 60/148 (40.54%), Postives = 88/148 (59.46%), Query Frame = 2
Query:   29 FAAVLPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            F   +P PKI  +  G +KK    FP  + LV+ E       ALEAAR++ N+ M   AG D F+L+V  +P HVLR +KM + AGADR+ +GMR AFG+P GT ARV    V++  R  ++++     ALR+A  K P   K+++++
Sbjct:   22 FMGGVPYPKITTFVQGNQKK---DFPIEMRLVAEEPCQIRHTALEAARVSVNRRMTEAAGLDYFYLKVVPYPHHVLREHKMATGAGADRISSGMRAAFGRPVGTAARVYPDDVIMIARTDEAHAKELKTALRKAAIKLPTPCKVVITK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_PYRCJ (50S ribosomal protein L10e OS=Pyrobaculum calidifontis (strain JCM 11548 / VA1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.209e-22
Identity = 66/151 (43.71%), Postives = 84/151 (55.63%), Query Frame = 2
Query:   26 HFAAVLPDPKIRIYDVGMKKKGADQ-FPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRK 475
            H A ++  PK   +D+G     A   F     LV+ E+     +ALEAAR   +KY+    G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+  V  K  +  H  EALRRA  K P   +I+V  K
Sbjct:   24 HGAPMIQIPK---FDMGTTSAAARAAFTMVAKLVAEERGQIRMQALEAARQISSKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYVEFKPEHLAHVKEALRRAASKLPIPTRIVVEPK 171          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_THENV (50S ribosomal protein L10e OS=Thermoproteus neutrophilus (strain DSM 2338 / JCM 9278 / V24Sta) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.191e-22
Identity = 64/151 (42.38%), Postives = 82/151 (54.30%), Query Frame = 2
Query:   26 HFAAVLPDPKIRIYDVGMKKKGADQ-FPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRK 475
            H A ++  PK   +D+G     A   FP    LV  E+     +ALEAAR    KY++   G   ++LR+   P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     K  +  H  EALRRA  K P   +I++  K
Sbjct:   24 HGAPMIQIPK---FDMGTTSAAARAAFPLVAKLVVQERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLEAVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEAGQVIFYAEFKPEHVAHMKEALRRASTKLPLPTRIVIEAK 171          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_UNCMA (50S ribosomal protein L10e OS=Uncultured methanogenic archaeon RC-I GN=rpl10e PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 5.474e-22
Identity = 59/144 (40.97%), Postives = 84/144 (58.33%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +P  K+  +D+G      ++ P  V LV  E      +ALEAARI+ N+Y+ +D GK  +  +VRV+P  VLR NK  + AGADR+  GMR AFGK  GT ARV  GQ + ++    +N   A EA+RRA  K P   +++V +
Sbjct:   26 VPGVKVAQFDMGNL---TEELPIAVTLVVNETCQIRHDALEAARISANRYLLNDVGKTNYRFKVRVYPHQVLRENKQATGAGADRVSDGMRRAFGKAVGTAARVYEGQGVFTIWVNRANFEKAKEAMRRAGHKLPTPYRVVVEK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_PYRAR (50S ribosomal protein L10e OS=Pyrobaculum arsenaticum (strain DSM 13514 / JCM 11321) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 9.338e-22
Identity = 63/151 (41.72%), Postives = 82/151 (54.30%), Query Frame = 2
Query:   26 HFAAVLPDPKIRIYDVGMKKKGADQ-FPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRK 475
            H A ++  PK   +D+G     A   FP    L+  E+     +ALEAAR   +KY+    G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQ+L     K  +  H  EA RRA  K P   +I++  K
Sbjct:   24 HGAPMIQIPK---FDMGTTSAAARATFPMVAKLIVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVIPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQILFYAEFKPEHLAHIKEAFRRAASKLPLPTRIVIEPK 171          
The following BLAST results are available for this feature:
BLAST of CF832341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_ARCFU1.539e-2444.7650S ribosomal protein L10e OS=Archaeoglobus fulgid... [more]
RL10_METTH7.639e-2442.3650S ribosomal protein L10e OS=Methanobacterium the... [more]
RL10_META31.303e-2343.2450S ribosomal protein L10e OS=Methanococcus aeolic... [more]
RL10_THEVO1.103e-2239.1950S ribosomal protein L10e OS=Thermoplasma volcani... [more]
RL10_THEPD1.441e-2244.7650S ribosomal protein L10e OS=Thermofilum pendens ... [more]
RL10_THEAC1.881e-2240.5450S ribosomal protein L10e OS=Thermoplasma acidoph... [more]
RL10_PYRCJ3.209e-2243.7150S ribosomal protein L10e OS=Pyrobaculum calidifo... [more]
RL10_THENV4.191e-2242.3850S ribosomal protein L10e OS=Thermoproteus neutro... [more]
RL10_UNCMA5.474e-2240.9750S ribosomal protein L10e OS=Uncultured methanoge... [more]
RL10_PYRAR9.338e-2241.7250S ribosomal protein L10e OS=Pyrobaculum arsenati... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832341 ID=CF832341; Name=CF832341; organism=Citrus sinensis; type=EST; length=574bp
AGAACGAACCCTACCCTAAGTCCCGCATTTTGCCGCGGTGCTCCCCGATC
CCAAGATCAGAATCTACGATGTCGGGATGAAGAAGAAAGGCGCCGACCAG
TTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAGAAGGAGAACGAGTCGAG
CGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAACAAGTACATGGCCTCGG
ACGCTGGCAAGGATGCTTTCCATTTGCGAGTGAGGGTGCACCCCTTCCAT
GTTCTGCGCATTAACAAGATGCTTTCGTGTGCTGGGGCTGATCGGCTCCA
GACTGGAATGAGGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTG
TTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGC
CACCATGCTCATGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGGCG
TCAAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTG
CTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGCGTG
AATGCCAAGCTTCTCGGATGTCAT
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