CF832341

Overview
NameCF832341
Unique NameCF832341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:88..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_PYRAE (50S ribosomal protein L10e OS=Pyrobaculum aerophilum GN=rpl10e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.220e-21
Identity = 65/151 (43.05%), Postives = 82/151 (54.30%), Query Frame = 2
Query:   26 HFAAVLPDPKIRIYDVGMKKKGA-DQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRK 475
            H A ++  PK   +D+G     A   F     LV  E+     +ALEAAR   +KY+    G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQVL     K  +  H  EALRRA  K P   +I++  K
Sbjct:   24 HGAPMIQIPK---FDMGTTSAAARTAFTMTAKLVVEERGQIRMQALEAARQMASKYLTKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVLFYAEFKPEHLPHIKEALRRAASKLPLPTRIVIEPK 171          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_METMP (50S ribosomal protein L10e OS=Methanococcus maripaludis GN=rpl10e PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.220e-21
Identity = 58/148 (39.19%), Postives = 85/148 (57.43%), Query Frame = 2
Query:   29 FAAVLPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +   +P PK+  Y +G     + +FP  V LVS         ALE++RIA NKY+ S+ G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A EALRR   K P   KI+V++
Sbjct:   22 YVRAVPQPKVVHYVMG---NPSAEFPVQVQLVSKSDILIRHNALESSRIAGNKYILSECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_METJA (50S ribosomal protein L10e OS=Methanocaldococcus jannaschii GN=rpl10e PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.593e-21
Identity = 59/144 (40.97%), Postives = 83/144 (57.64%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +P PK+  + +G       +FP  V+LV+         ALEAAR+A NKY+    G+  +  ++RV+P  +LR +KM + AGADR+  GMR AFGKP GT ARV  GQ +L+V         A EALRRA  K P   +I++ +
Sbjct:   27 VPQPKVVHFIMGNLSA---EFPVKVNLVATRPIQIRHNALEAARVAANKYLTKMCGRMGYKFQIRVYPHQILREHKMATGAGADRISDGMRLAFGKPIGTAARVKEGQAILTVWVNPDKFPAAKEALRRAAMKLPVPCRIVIEQ 167          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_METM5 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 3.548e-21
Identity = 57/148 (38.51%), Postives = 84/148 (56.76%), Query Frame = 2
Query:   29 FAAVLPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +   +P PK+  Y +G     + +FP  V LVS         ALE++RIA NKY+  + G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A EALRR   K P   KI+V++
Sbjct:   22 YVRAVPQPKVVHYVMG---NSSVEFPVEVQLVSKSDILIRHNALESSRIAGNKYIMGECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPERFYAAKEALRRCSMKLPTACKIVVTK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_PYRIL (50S ribosomal protein L10e OS=Pyrobaculum islandicum (strain DSM 4184 / JCM 9189) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 4.634e-21
Identity = 63/151 (41.72%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   26 HFAAVLPDPKIRIYDVGMKKKGADQ-FPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSRK 475
            H A ++  PK   +D+G+    A   F     LV  E+     +ALEAAR    KY++   G   ++LR+ V P HVLR N+ML+ AGADRLQ GMR AFG P G  ARV  GQV+     +  +  H  EALRRA  K P   +I++  K
Sbjct:   24 HGAPMIQIPK---FDMGVTSAAARAAFSMVAKLVVEERGQIRMQALEAARQMAYKYLSKYVGDANYYLRLNVVPHHVLRENRMLAMAGADRLQEGMRLAFGSPAGRAARVEPGQVIFYAEFRPEHIAHIKEALRRAASKLPLPTRIVIETK 171          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_METM7 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = 2
Query:   29 FAAVLPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +   +P PK+  Y +G     + +FP  V L+S         ALE++RIA NKY+  + G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A EALRR   K P   KI+V++
Sbjct:   22 YVRAVPQPKVVHYVMG---NSSVEFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_METM6 (50S ribosomal protein L10e OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.052e-21
Identity = 56/148 (37.84%), Postives = 84/148 (56.76%), Query Frame = 2
Query:   29 FAAVLPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +   +P PK+  Y +G     + +FP  V L+S         ALE++RIA NKY+  + G+  +   +RV+P  +LR NKM + AGADR+  GMR +FGK  GT A+V  GQ ++++       + A EALRR   K P   KI+V++
Sbjct:   22 YVRAVPQPKVVHYVMG---NSSVEFPVEVQLISKSDILIRHNALESSRIAGNKYILRECGRTGYLFNIRVYPHEILRENKMAAGAGADRISDGMRLSFGKAVGTAAKVKKGQEIITIGVNPEKFYAAKEALRRCSMKLPTACKIVVTK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_METMA (50S ribosomal protein L10e OS=Methanosarcina mazei GN=rpl10e PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 7.905e-21
Identity = 60/142 (42.25%), Postives = 84/142 (59.15%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIV 466
            +P  ++  YD+G   K    FP  + LV+ EK      ALEAARI  N+++ +DAGK  F++++RV+P  VLR NK  + AGADR+ +GMR AFGK  GT ARV   Q L +V  +  N   A +AL  A  K P   +I++
Sbjct:   26 VPGSQVIHYDMG--DKANTTFPVKISLVAEEKCQIRHTALEAARITANRHLVADAGKMGFYMKLRVYPHEVLRENKQATGAGADRVSSGMRRAFGKNVGTAARVNSMQKLFTVAVEKQNFPAAKKALWHAGQKLPTPVRIVI 165          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_PICTO (50S ribosomal protein L10e OS=Picrophilus torridus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.348e-20
Identity = 57/148 (38.51%), Postives = 87/148 (58.78%), Query Frame = 2
Query:   29 FAAVLPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            F   +P PKI  +  G +KK    F   + LV+ E       ALEAAR++ N+ +   AG D + L++R +P  V+R +KM + AGADR+ +GMR AFG+P GT ARV  GQ+++  R   +N+    +AL +A  K P   K++V++
Sbjct:   22 FMGGVPYPKITTFIQGNQKK---DFEIEMMLVAEEACQIRHTALEAARVSVNRKLLDAAGSDNYFLQIRPYPHQVIREHKMATGAGADRISSGMRAAFGRPVGTAARVYPGQIIMVGRVDRNNAKLLKDALHKASIKLPTPCKVVVTK 166          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_METAC (50S ribosomal protein L10e OS=Methanosarcina acetivorans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 3.923e-20
Identity = 58/142 (40.85%), Postives = 82/142 (57.75%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIV 466
            +P  ++  YD+G   K    FP  + L+  EK      ALEAARI  N+++ +D GK  F++++RV+P  V+R NK  + AGADR+ +GMR AFGK  GT ARV   Q + +V  +  N   A EAL  A  K P   +I+V
Sbjct:   26 VPGSQVIHYDMG--DKANTSFPVKISLIVEEKCQIRHTALEAARITANRHLVADTGKMGFYMKLRVYPHEVIRENKQATGAGADRVSSGMRRAFGKNVGTAARVKPMQKIFTVAVEKQNFKAAKEALWHAGQKLPTPCRIVV 165          
The following BLAST results are available for this feature:
BLAST of CF832341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_PYRAE1.220e-2143.0550S ribosomal protein L10e OS=Pyrobaculum aerophil... [more]
RL10_METMP1.220e-2139.1950S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METJA1.593e-2140.9750S ribosomal protein L10e OS=Methanocaldococcus j... [more]
RL10_METM53.548e-2138.5150S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_PYRIL4.634e-2141.7250S ribosomal protein L10e OS=Pyrobaculum islandic... [more]
RL10_METM76.052e-2137.8450S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METM66.052e-2137.8450S ribosomal protein L10e OS=Methanococcus maripa... [more]
RL10_METMA7.905e-2142.2550S ribosomal protein L10e OS=Methanosarcina mazei... [more]
RL10_PICTO1.348e-2038.5150S ribosomal protein L10e OS=Picrophilus torridus... [more]
RL10_METAC3.923e-2040.8550S ribosomal protein L10e OS=Methanosarcina aceti... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832341 ID=CF832341; Name=CF832341; organism=Citrus sinensis; type=EST; length=574bp
AGAACGAACCCTACCCTAAGTCCCGCATTTTGCCGCGGTGCTCCCCGATC
CCAAGATCAGAATCTACGATGTCGGGATGAAGAAGAAAGGCGCCGACCAG
TTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAGAAGGAGAACGAGTCGAG
CGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAACAAGTACATGGCCTCGG
ACGCTGGCAAGGATGCTTTCCATTTGCGAGTGAGGGTGCACCCCTTCCAT
GTTCTGCGCATTAACAAGATGCTTTCGTGTGCTGGGGCTGATCGGCTCCA
GACTGGAATGAGGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTG
TTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGC
CACCATGCTCATGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGGCG
TCAAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTG
CTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGCGTG
AATGCCAAGCTTCTCGGATGTCAT
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