CF832341

Overview
NameCF832341
Unique NameCF832341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:88..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_SULTO (50S ribosomal protein L10e OS=Sulfolobus tokodaii GN=rpl10e PE=3 SV=2)

HSP 1 Score: 86.6557 bits (213), Expect = 9.044e-17
Identity = 56/142 (39.44%), Postives = 79/142 (55.63%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKI 460
            +P PKI  + +G      D   + + LV+ EK      ALEAAR+   K + +  G D  F L V  +P HV+R NKM++ AGADRLQ GMR +FGKP GT AR+  +G +++  + K  +   A +A   A  K P + KI
Sbjct:   26 VPMPKITKFTMGNVNGNYD---YELRLVALEKGQIRHNALEAARVLALKQLTNKTGSDQNFALIVLKYPHHVIRENKMMAFAGADRLQDGMRLSFGKPIGTAARIERLGDIIMIAKVKKEHLEIAKKAFEAAASKIPLKTKI 164          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_HALWD (50S ribosomal protein L10e OS=Haloquadratum walsbyi (strain DSM 16790) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 3.437e-16
Identity = 51/151 (33.77%), Postives = 83/151 (54.97%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRA--KFKFPGR------QKIIVS 469
            +P  KI  +++G  + G   +P  + L   E+      +LE+AR++ N+ M    G+D + + +R  P  +LR NK  + AGADR+  GMR AFGKP GT AR+   + + ++ C+  ++  A + LRRA  K   P R      QK+++S
Sbjct:   26 IPGSKIAQHNMGNLQTGPQDYPVQISLRIEEECQIRHGSLESARLSANRTMLKQVGQDNYKMVLRKFPHQILRENKQATGAGADRVSDGMRQAFGKPVGTAARIQQNERVFTIYCEVDDASVAKDGLRRAYNKMSPPCRIDVEKGQKLLIS 176          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_SULIY (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKI 460
            +P PKI  +  G      D   + V L++ E       ALEA R    K +    G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A EAL+ A  K P R +I
Sbjct:   26 IPQPKITKFTSGNPNGDYD---YEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_SULIN (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKI 460
            +P PKI  +  G      D   + V L++ E       ALEA R    K +    G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A EAL+ A  K P R +I
Sbjct:   26 IPQPKITKFTSGNPNGDYD---YEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_SULIM (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKI 460
            +P PKI  +  G      D   + V L++ E       ALEA R    K +    G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A EAL+ A  K P R +I
Sbjct:   26 IPQPKITKFTSGNPNGDYD---YEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_SULIL (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKI 460
            +P PKI  +  G      D   + V L++ E       ALEA R    K +    G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A EAL+ A  K P R +I
Sbjct:   26 IPQPKITKFTSGNPNGDYD---YEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_SULIK (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKI 460
            +P PKI  +  G      D   + V L++ E       ALEA R    K +    G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A EAL+ A  K P R +I
Sbjct:   26 IPQPKITKFTSGNPNGDYD---YEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_SULIA (50S ribosomal protein L10e OS=Sulfolobus islandicus (strain M.16.27) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 7.656e-16
Identity = 55/142 (38.73%), Postives = 78/142 (54.93%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKI 460
            +P PKI  +  G      D   + V L++ E       ALEA R    K +    G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G++L+ V+ K  +   A EAL+ A  K P R +I
Sbjct:   26 IPQPKITKFTSGNPNGDYD---YEVRLITTEIGQIRHNALEAVRTITLKTLTKRTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGEILIVVKVKKEHLDFAKEALKIASKKLPLRTRI 164          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_SULSO (50S ribosomal protein L10e OS=Sulfolobus solfataricus GN=rpl10e PE=3 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 1.000e-15
Identity = 54/142 (38.03%), Postives = 78/142 (54.93%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKD-AFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARV-AIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKI 460
            +P PKI  +  G      D   + V L++ E       ALEA R    K ++   G + +F + +  +P HVLR NKM++ AGADRLQ GMR +FG P GT AR+  +G+ L+ ++ K  +   A EAL+ A  K P R +I
Sbjct:   26 IPQPKITKFTSGNPNGDYD---YEVRLITTEIGQIRHNALEAVRTLTLKTLSKKTGSETSFFMWILKYPHHVLRENKMMAFAGADRLQDGMRLSFGTPIGTAARIEKLGETLIVIKVKKEHLEFAKEALKIASKKLPLRTRI 164          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_HALLT (50S ribosomal protein L10e OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 8.465e-15
Identity = 46/144 (31.94%), Postives = 75/144 (52.08%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +P  KI  +++G      D +P  + L   E+      +LE++R++ N+++  + G+  + + +R  P  V+R NK  + AGADR+  GMR AFGKP GT AR+    ++ +  C    +    EA RRA  K     +I V R
Sbjct:   26 IPGSKIAQHNMGDLSAEPDDYPVQISLRVEEELQIRHGSLESSRLSANRHLIKELGEGNYKMTLRKFPHQVIRENKQATGAGADRVSDGMRQAFGKPVGTAARLNKDDIVFTAYCDVEQASVVKEAFRRAYNKLSPPCRITVDR 169          
The following BLAST results are available for this feature:
BLAST of CF832341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_SULTO9.044e-1739.4450S ribosomal protein L10e OS=Sulfolobus tokodaii ... [more]
RL10_HALWD3.437e-1633.7750S ribosomal protein L10e OS=Haloquadratum walsby... [more]
RL10_SULIY7.656e-1638.7350S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIN7.656e-1638.7350S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIM7.656e-1638.7350S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIL7.656e-1638.7350S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIK7.656e-1638.7350S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULIA7.656e-1638.7350S ribosomal protein L10e OS=Sulfolobus islandicu... [more]
RL10_SULSO1.000e-1538.0350S ribosomal protein L10e OS=Sulfolobus solfatari... [more]
RL10_HALLT8.465e-1531.9450S ribosomal protein L10e OS=Halorubrum lacusprof... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832341 ID=CF832341; Name=CF832341; organism=Citrus sinensis; type=EST; length=574bp
AGAACGAACCCTACCCTAAGTCCCGCATTTTGCCGCGGTGCTCCCCGATC
CCAAGATCAGAATCTACGATGTCGGGATGAAGAAGAAAGGCGCCGACCAG
TTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAGAAGGAGAACGAGTCGAG
CGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAACAAGTACATGGCCTCGG
ACGCTGGCAAGGATGCTTTCCATTTGCGAGTGAGGGTGCACCCCTTCCAT
GTTCTGCGCATTAACAAGATGCTTTCGTGTGCTGGGGCTGATCGGCTCCA
GACTGGAATGAGGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTG
TTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGC
CACCATGCTCATGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGGCG
TCAAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTG
CTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGCGTG
AATGCCAAGCTTCTCGGATGTCAT
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