CF832341

Overview
NameCF832341
Unique NameCF832341
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length574
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig242 contig Csv1_Contig242:88..661. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_NATPD (50S ribosomal protein L10e OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=rpl10e PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 7.166e-14
Identity = 47/145 (32.41%), Postives = 77/145 (53.10%), Query Frame = 2
Query:   41 LPDPKIRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDA-FHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKDSNSHHAHEALRRAKFKFPGRQKIIVSR 472
            +P  K+  Y +G  +   + +   + L+  E+      +LEA+R++ N+ M  + G+D  + + +R  P  V+R NK  + AGADR+  GMR AFGK  GT AR+  G+ + ++ C   ++  A +A RRA  K      I V R
Sbjct:   26 IPGSKVAQYKMGNFEADPEDYEVQISLIVDEEVQIRHGSLEASRLSANRRMLKELGEDGDYKMILRKFPHQVIRENKQATGAGADRVSDGMRQAFGKIVGTAARINKGERVFTIWCHPEDADAAKDAFRRAYNKISPPCTIKVER 170          
BLAST of CF832341 vs. ExPASy Swiss-Prot
Match: RL10_NANEQ (50S ribosomal protein L10e OS=Nanoarchaeum equitans GN=rpl10e PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 5.136e-12
Identity = 41/136 (30.15%), Postives = 72/136 (52.94%), Query Frame = 2
Query:   56 IRIYDVGMKKKGADQFPFCVHLVSWEKENESSEALEAARIACNKYMASDAGKDAFHLRVRVHPFHVLRINKML-SCAGADRLQTGMRGAFGKPQGTCARVAIGQVLLSVRCKD-SNSHHAHEALRRAKFKFPGRQK 457
            +R++ +G   +   ++ +   LV+ E       A+EA R+  NKY+ S  GK  +   +R +P H+ R   ++   AGADR+  GMR +FG+P+G   ++  G+ LLS+   D + +      L+ A+ K P R +
Sbjct:   37 VRLFHMGELTRNPSEWQYEASLVAKENHQIRDNAIEAIRVMVNKYLESTLGKKRYLFIIRKYPHHIYREKPVVGGYAGADRISQGMRLSFGRPKGRAVQIYEGEKLLSIFFDDITKAKDIKYFLQVARSKLPWRYR 172          
The following BLAST results are available for this feature:
BLAST of CF832341 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 92
Match NameE-valueIdentityDescription
RL10_NATPD7.166e-1432.4150S ribosomal protein L10e OS=Natronomonas pharaon... [more]
RL10_NANEQ5.136e-1230.1550S ribosomal protein L10e OS=Nanoarchaeum equitan... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L09_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832341 ID=CF832341; Name=CF832341; organism=Citrus sinensis; type=EST; length=574bp
AGAACGAACCCTACCCTAAGTCCCGCATTTTGCCGCGGTGCTCCCCGATC
CCAAGATCAGAATCTACGATGTCGGGATGAAGAAGAAAGGCGCCGACCAG
TTCCCCTTCTGCGTTCACCTCGTCAGTTGGGAGAAGGAGAACGAGTCGAG
CGAGGCCTTGGAAGCTGCCCGTATCGCTTGCAACAAGTACATGGCCTCGG
ACGCTGGCAAGGATGCTTTCCATTTGCGAGTGAGGGTGCACCCCTTCCAT
GTTCTGCGCATTAACAAGATGCTTTCGTGTGCTGGGGCTGATCGGCTCCA
GACTGGAATGAGGGGTGCTTTTGGAAAGCCCCAAGGAACCTGTGCTCGTG
TTGCTATCGGGCAGGTCTTGCTTTCTGTCCGTTGCAAGGACAGTAACAGC
CACCATGCTCATGAGGCCCTTCGCCGTGCTAAGTTCAAGTTTCCTGGGCG
TCAAAAGATTATTGTCAGCAGGAAATGGGGATTTACCAAGTTCAGCCGTG
CTGATTATCTGAGGTGGAAGTCGGAGAACAGGATTGTCCCAGATGGCGTG
AATGCCAAGCTTCTCGGATGTCAT
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