CF832355

Overview
NameCF832355
Unique NameCF832355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_YARLI (40S ribosomal protein S0 OS=Yarrowia lipolytica GN=RPS0 PE=3 SV=2)

HSP 1 Score: 246.128 bits (627), Expect = 1.464e-64
Identity = 116/193 (60.10%), Postives = 150/193 (77.72%), Query Frame = 3
Query:   45 DIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 620
            DIQ +LAA+ H+G+KN   Q   YVFK+R DG+ IIN+GKTWEK+Q+AAR+I A+ NP D++  SAR YGQRAVLKFA +  A AIAGR TPG+FTN +  SF EPRLLI+TDPRTDHQ IKEA+  NIP IA  DTDSP+ +VD+ IP NNKG+HS+G ++W+++R VL++RG +   + +W VM DL+FYR
Sbjct:   12 DIQNLLAAQTHIGSKNVQVQNIPYVFKQRADGVNIINVGKTWEKIQLAARIIAAVPNPADVVAISARTYGQRAVLKFANHCGATAIAGRFTPGSFTNYITRSFKEPRLLIVTDPRTDHQAIKEASYVNIPVIALVDTDSPVEFVDVAIPCNNKGRHSVGLVWWMISREVLRLRGALEDRNTEWSVMPDLYFYR 204          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA2_SCHPO (40S ribosomal protein S0-B OS=Schizosaccharomyces pombe GN=rps0b PE=1 SV=1)

HSP 1 Score: 245.743 bits (626), Expect = 1.913e-64
Identity = 121/201 (60.20%), Postives = 152/201 (75.62%), Query Frame = 3
Query:   18 PRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            P  L+  + DI+ +LAA+ H+G+KN + +ME YV+KRR+DGI+IINLGKTWEKL +AARVI  IENP D+ V S+RPYG RAVLKFA +T A AIAGR TPG FTN +  ++ EPRL+I+TDPR D Q IKEA+  NIP IA CDTDS + +VD+ IP NNKG  SIG  ++LLAR VL++RG I     W+VM DL+FYR
Sbjct:    8 PSVLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIATIENPADVCVISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQAIKEASFVNIPVIALCDTDSILNHVDVAIPINNKGYKSIGLAWYLLAREVLRLRGNISRTTAWEVMPDLYFYR 208          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_TOXGO (40S ribosomal protein SA OS=Toxoplasma gondii PE=2 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 3.262e-64
Identity = 121/201 (60.20%), Postives = 150/201 (74.63%), Query Frame = 3
Query:   24 QLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHK--WDVMVDLFFYR 620
            +LS +E  I  ML  + H+GTKN + +M  YVFK  ++GI++INL KTWEK+ MAARVIVAIENP D++V SARPYG RAVLKF++Y  A AIAGR TPG  TNQ+   F EPRLLI+TDPRTD Q ++E+A  N+P IA CDTDSP+ +VDI IP NNKGK SI  ++WLLAR VL +RG + P     WDVMVD+F +R
Sbjct:    8 KLSLQEDSIAKMLICKAHIGTKNVEHKMRPYVFKSTSEGIHLINLAKTWEKILMAARVIVAIENPADVLVISARPYGSRAVLKFSQYVGAQAIAGRWTPGMLTNQITQKFMEPRLLIVTDPRTDAQAVRESAYANVPVIALCDTDSPLEHVDICIPCNNKGKESIALMYWLLAREVLYLRGEL-PSRSVPWDVMVDMFLWR 207          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_DICDI (40S ribosomal protein SA OS=Dictyostelium discoideum GN=rpsA PE=1 SV=1)

HSP 1 Score: 243.047 bits (619), Expect = 1.240e-63
Identity = 122/203 (60.10%), Postives = 147/203 (72.41%), Query Frame = 3
Query:   12 RLPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            + P  L+  + DI  MLA + HLG  N D +ME Y +KR+++G +IINL KTWEK+Q+AARVIVAIENP DI V SA+P GQRAVLKFA +  A A +GR TPGTFTNQ+Q+ F EPRLLI+ DP  D QP+ EA+  NIPTIA CDT S +  VDI IP NN+GK+SI  +FWLLAR VL +RGTI     W V VDLF YR
Sbjct:    3 QFPAALNPHQDDILKMLACQTHLGGNNVDVEMESYTWKRKDNGHFIINLAKTWEKIQLAARVIVAIENPADISVISAKPLGQRAVLKFANFIGATAFSGRFTPGTFTNQIQSKFTEPRLLIVADPLLDKQPLMEASYVNIPTIALCDTTSCLDGVDIAIPCNNRGKNSIALMFWLLAREVLYLRGTIPRNTTWSVKVDLFIYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_CHLVR (40S ribosomal protein SA OS=Chlorohydra viridissima PE=2 SV=1)

HSP 1 Score: 241.506 bits (615), Expect = 3.607e-63
Identity = 121/198 (61.11%), Postives = 147/198 (74.24%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            LS KE D+   LAA VHLG+ N     + YVFKR++DGI+IINL KTWEKL +AAR+I +IENP D+ V S+RPYG RAVLKFA+ T A  IAGR TPGTFTNQ+Q  F EPRLLI TDP+ D+Q + EA+  NIP IA C+TDSP+R+VD  IP NN+G  SIG ++W+LAR VL +RG I     W+VM DLFFYR
Sbjct:    8 LSLKEEDVVKFLAAGVHLGSTNVGSSCQGYVFKRKSDGIHIINLRKTWEKLILAARIIASIENPADVCVISSRPYGTRAVLKFAQSTGAIPIAGRFTPGTFTNQIQKRFREPRLLISTDPQHDNQALTEASYVNIPVIALCNTDSPLRFVDCAIPCNNRGIQSIGTMWWILAREVLHLRGIISRKTPWNVMPDLFFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_USTMA (40S ribosomal protein S0 OS=Ustilago maydis GN=RPS0 PE=3 SV=1)

HSP 1 Score: 239.195 bits (609), Expect = 1.790e-62
Identity = 113/203 (55.67%), Postives = 151/203 (74.38%), Query Frame = 3
Query:   12 RLPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            ++P  L+  E DI ++LAA+ H+GTKN D QM  Y++KRR DGI+++N+GKTWEK+  AAR++ AIENP DI V S R YG RAVLKFA  T A AIAGR TPG+FTN +  SF EPR++++TDPR DHQ I+EA+  NIP I+F D+DSP+++VD+ IP N +G+HS+G L+WLL R VL+++     G    VM D+FFYR
Sbjct:    3 KVPAALNPTEEDISLLLAAQTHIGTKNADKQMAPYIYKRRADGIHLLNIGKTWEKIVFAARILAAIENPADICVISGRQYGHRAVLKFAAQTGATAIAGRFTPGSFTNYITRSFKEPRVIVVTDPRVDHQAIREASYVNIPCISFVDSDSPLKFVDVAIPGNVRGRHSVGLLWWLLCRTVLRIK-----GGDLSVMPDMFFYR 200          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_LACTC (40S ribosomal protein S0 OS=Lachancea thermotolerans (strain CBS 6340) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 1.979e-61
Identity = 115/203 (56.65%), Postives = 147/203 (72.41%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGT-IRPGHKWDVMVDLFFYR 620
            LP        D Q++LAA VHLG+KN     E YVFK R DG+ ++N+GKTWEK+ +AAR+I AI NP D++  S+R YGQRAVLKF+ +T A AIAGR TPG+FTN +  SF EPRL+I+TDPR+D Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG +++LLAR VL++RG+ +     W +M DL+FYR
Sbjct:    3 LPATFDLTPEDAQLLLAANVHLGSKNVQVHQEPYVFKTRPDGVNVVNVGKTWEKIVLAARIIAAIPNPEDVVAISSRTYGQRAVLKFSAHTGATAIAGRFTPGSFTNYITRSFKEPRLVIVTDPRSDAQAIKESSYVNIPVIALTDLDSPSEYVDVAIPCNNKGKHSIGLIWYLLAREVLRLRGSLVDRTQPWSIMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_PICPG (40S ribosomal protein S0 OS=Pichia pastoris (strain GS115) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.585e-61
Identity = 113/203 (55.67%), Postives = 145/203 (71.43%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 620
            LP        D +++LAA VHLG KNC    E YV+K R DG+ +IN+GKTWEK+ +AAR+I AI NP D++  S+R +GQRAVLKFA +T+  AIAGR TPG+FTN +   F EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  +VD+ IP NNKGKHSIG +++LL+R VL++RG +      W VM DL+FYR
Sbjct:    3 LPASFDLTAEDAKLLLAANVHLGAKNCQVHNEPYVYKTRPDGVNVINIGKTWEKIVLAARIIAAIPNPEDVVAVSSRTFGQRAVLKFASHTNGSAIAGRFTPGSFTNYITREFKEPRLIIVTDPRTDSQAIKESSYVNIPIIALTDMDSPSEFVDVAIPCNNKGKHSIGLIWYLLSREVLRLRGVLPNRTEAWSVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_CLAL4 (40S ribosomal protein S0 OS=Clavispora lusitaniae (strain ATCC 42720) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.585e-61
Identity = 116/203 (57.14%), Postives = 145/203 (71.43%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 620
            LP   +    D +++LAA VHLG+KN     E YV+K R DG+ +IN+ KTWEK+ +AAR+I AI N  D++V S+R +GQRAVLKFA +T A  IAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKE++  NIP IA  D DSP  YVD+ IP NNKGKHSIG ++WLLAR VL++RG I     +W VM DL+FYR
Sbjct:    3 LPESFALTAEDAKLLLAANVHLGSKNVQVHNEPYVYKTRPDGVNVINIAKTWEKIVLAARIIAAIPNASDVVVCSSRTFGQRAVLKFASHTGATPIAGRFTPGNFTNYITRSFKEPRLVIVTDPRTDAQAIKESSYVNIPVIALSDVDSPSEYVDVAIPCNNKGKHSIGLIWWLLAREVLRLRGIIPDREAEWSVMPDLYFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_BRUMA (40S ribosomal protein SA OS=Brugia malayi GN=Bm1_41245 PE=3 SV=2)

HSP 1 Score: 235.343 bits (599), Expect = 2.585e-61
Identity = 116/200 (58.00%), Postives = 148/200 (74.00%), Query Frame = 3
Query:   36 KEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRG--TIRPGHKWD---VMVDLFFYR 620
            KE D   +LA + H+G  NCDFQME+YV+KRR DGI+II+L KTWEKL +AAR I AI+NPGD+ V SARPY QRA+LKFA +T +  I GR TPG  TNQ+Q  F EPRLLI++DPR DHQ + EA+   +P I+FC+TDSP++++DI IP NNKG  SIG ++WLLAR VL ++G  T + G   D   +M DL+FYR
Sbjct:   11 KEEDAIKLLACQTHVGAANCDFQMEQYVWKRRADGIHIIHLRKTWEKLLLAARAIAAIDNPGDVCVVSARPYAQRALLKFAAHTGSTPIFGRFTPGCLTNQIQKQFKEPRLLIVSDPRVDHQAVTEASYVGVPVISFCNTDSPLKFIDIAIPCNNKGVQSIGLMWWLLAREVLLIKGKMTRQTGFVLDDKEIMPDLYFYR 210          
The following BLAST results are available for this feature:
BLAST of CF832355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_YARLI1.464e-6460.1040S ribosomal protein S0 OS=Yarrowia lipolytica GN... [more]
RSSA2_SCHPO1.913e-6460.2040S ribosomal protein S0-B OS=Schizosaccharomyces ... [more]
RSSA_TOXGO3.262e-6460.2040S ribosomal protein SA OS=Toxoplasma gondii PE=2... [more]
RSSA_DICDI1.240e-6360.1040S ribosomal protein SA OS=Dictyostelium discoide... [more]
RSSA_CHLVR3.607e-6361.1140S ribosomal protein SA OS=Chlorohydra viridissim... [more]
RSSA_USTMA1.790e-6255.6740S ribosomal protein S0 OS=Ustilago maydis GN=RPS... [more]
RSSA_LACTC1.979e-6156.6540S ribosomal protein S0 OS=Lachancea thermotolera... [more]
RSSA_PICPG2.585e-6155.6740S ribosomal protein S0 OS=Pichia pastoris (strai... [more]
RSSA_CLAL42.585e-6157.1440S ribosomal protein S0 OS=Clavispora lusitaniae ... [more]
RSSA_BRUMA2.585e-6158.0040S ribosomal protein SA OS=Brugia malayi GN=Bm1_4... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832355 ID=CF832355; Name=CF832355; organism=Citrus sinensis; type=EST; length=743bp
CGGAACAGCAACGGCTCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATT
CAGATGATGTTAGCCGCCGAAGTACATTTGGGTACTAAGAACTGTGACTT
CCAAATGGAACGTTACGTGTTCAAGCGCCGAAACGATGGAATTTATATTA
TCAATCTTGGCAAGACTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATC
GTAGCCATTGAAAACCCTGGGGACATTATTGTCCAATCAGCTAGACCCTA
TGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTACACTCACGCCCATGCCA
TTGCTGGCAGGCACACTCCTGGTACATTTACCAATCAAATGCAAACATCA
TTCAATGAGCCCCGACTTCTCATTCTAACAGATCCACGAACAGACCATCA
GCCAATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATTGCCTTTTGTG
ACACTGACTCACCTATGCGTTATGTTGATATTGGCATTCCTGCCAATAAC
AAGGGCAAACACAGCATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGT
TCTCCAGATGCGCGGCACTATTCGTCCTGGCCACAAGTGGGATGTGATGG
TCGATCTGTTCTTCTACAGGGAGCCAGAAGAAACCAAGCAGGCTGAAGAA
GAAGAAACTGCTGCTATTGATTATGCTACAGCAGAGTACAGCATGAATCT
TACCAGTGGTGAGCAATGGCCTTCCCAAATTGCTGATGGTGGG
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