CF832355

Overview
NameCF832355
Unique NameCF832355
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length743
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CF832355_ssr645 microsatellite CF832355_ssr645:645..656. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig423 contig Csv1_Contig423:88..830. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_ORNPR (40S ribosomal protein SA OS=Ornithodoros parkeri PE=2 SV=1)

HSP 1 Score: 262.307 bits (669), Expect = 1.975e-69
Identity = 122/198 (61.62%), Postives = 154/198 (77.78%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            L  K+ D++  L A+ H+GT   DFQM++Y FKRR+DG+Y+I+L KTWEKL +AAR IVAIENP ++   S+RPYGQRAVLKFA +T A  IAGR TPGTFTNQ+Q +F EPRLL++ DPR DHQP+ EA+  NIP IAFC+TD+ +RYVD+ IP NNK +HSIG ++W+L R VL+MRG+I     WD MVDLFFYR
Sbjct:    8 LGLKDDDVRRFLTAKTHIGTAQLDFQMQQYCFKRRSDGVYLIDLKKTWEKLLLAARAIVAIENPAEVCAISSRPYGQRAVLKFASFTGATPIAGRFTPGTFTNQIQAAFREPRLLVVCDPREDHQPVTEASYVNIPVIAFCNTDACLRYVDVAIPCNNKAQHSIGLMWWMLTREVLRMRGSIIREIPWDTMVDLFFYR 205          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_MAGGR (40S ribosomal protein S0 OS=Magnaporthe grisea GN=RPS0 PE=3 SV=1)

HSP 1 Score: 261.922 bits (668), Expect = 2.579e-69
Identity = 124/203 (61.08%), Postives = 156/203 (76.85%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTI-RPGHKWDVMVDLFFYR 620
            LP   +    DI+M+LAA+ H+G+KN    M  Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA CDTDSP  YVD+ IP NNKG+H+IGC++W+LAR VL++RGTI      WDVMVDL+FYR
Sbjct:    6 LPSVFNATSQDIEMLLAAQSHIGSKNLQVHMAPYLWKTRQDGVNVINVGKTWEKIVLAARIITAIDNPADVCVISARPYGQRAVLKFAAHTGAQAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEYVDVAIPTNNKGRHAIGCIWWMLAREVLRLRGTIYNRETPWDVMVDLYFYR 208          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_AJECG (40S ribosomal protein S0 OS=Ajellomyces capsulata (strain ATCC 26029 / G186AR / H82 / RMSCC 2432) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 261.536 bits (667), Expect = 3.368e-69
Identity = 125/203 (61.58%), Postives = 157/203 (77.34%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 620
            LP   +    DI+M+LAA+ HLG+KN    ME Y++K R DGI +IN+GKTWEK+ +AAR+I A++NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTDHQ IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGT+     +WDV+VDL+FYR
Sbjct:    6 LPPVFNATSQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGINVINIGKTWEKIVLAARIIAAVDNPADICVISARPYGQRAVLKFAAHTGAVAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDHQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTLASRETEWDVVVDLYFYR 208          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_AJEDS (40S ribosomal protein S0 OS=Ajellomyces dermatitidis (strain SLH14081) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.399e-69
Identity = 125/203 (61.58%), Postives = 157/203 (77.34%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 620
            LP   +    DI+M+LAA+ HLG+KN    M+ Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTDHQ IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGTI     +WDV+VDL+FYR
Sbjct:    6 LPPIFNATSQDIEMLLAAQCHLGSKNLQVHMDPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFAAHTGAAAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDHQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTIASRETEWDVVVDLYFYR 208          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_AJEDR (40S ribosomal protein S0 OS=Ajellomyces dermatitidis (strain ER-3) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 261.151 bits (666), Expect = 4.399e-69
Identity = 125/203 (61.58%), Postives = 157/203 (77.34%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 620
            LP   +    DI+M+LAA+ HLG+KN    M+ Y++K R DGI +IN+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTDHQ IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++W+LAR VL++RGTI     +WDV+VDL+FYR
Sbjct:    6 LPPIFNATSQDIEMLLAAQCHLGSKNLQVHMDPYLWKTRPDGINVINIGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFAAHTGAAAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDHQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWMLAREVLRLRGTIASRETEWDVVVDLYFYR 208          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_NECH7 (40S ribosomal protein S0 OS=Nectria haematococca (strain 77-13-4 / FGSC 9596 / MPVI) GN=RPS0 PE=3 SV=1)

HSP 1 Score: 260.381 bits (664), Expect = 7.503e-69
Identity = 124/203 (61.08%), Postives = 156/203 (76.85%), Query Frame = 3
Query:   15 LPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 620
            LP   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ ++N+GKTWEK+ +AAR+I AI+NP D+ V SARPYGQRAVLKFA +T A AIAGR TPG+FTN +  SF EPRL+++TDPRTD Q IKEA+  NIP IA  DTDSP  YVD+ IP NNKG+H+IGC++W+LAR VL++RGTI      WDVMVDL+FYR
Sbjct:    6 LPSVFNATSQDIEMLLAAQCHLGSKNLQVHMENYLWKTRADGVNVLNVGKTWEKIVLAARIIAAIDNPADVCVISARPYGQRAVLKFASHTGATAIAGRFTPGSFTNYITRSFKEPRLIVVTDPRTDAQAIKEASYVNIPVIALTDTDSPTEYVDVAIPTNNKGRHAIGCVWWMLAREVLRLRGTIYSRETPWDVMVDLYFYR 208          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_ASPTN (40S ribosomal protein S0 OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156) GN=rps0 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.800e-69
Identity = 126/204 (61.76%), Postives = 157/204 (76.96%), Query Frame = 3
Query:   12 RLPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 620
            +LP   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AI+NP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+HSIG ++WLLAR VL++RGT+     +WDV+VDL+FYR
Sbjct:    5 QLPPMFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIDNPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTDFVDVAIPTNNKGRHSIGLVWWLLAREVLRLRGTLASREAEWDVVVDLYFYR 208          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFU (40S ribosomal protein S0 OS=Aspergillus fumigatus GN=rps0 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.800e-69
Identity = 126/204 (61.76%), Postives = 157/204 (76.96%), Query Frame = 3
Query:   12 RLPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 620
            +LP   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AIENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR
Sbjct:    5 QLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIENPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVDLYFYR 208          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_ASPFC (40S ribosomal protein S0 OS=Aspergillus fumigatus (strain CEA10 / CBS 144.89 / FGSC A1163) GN=rps0 PE=3 SV=1)

HSP 1 Score: 259.996 bits (663), Expect = 9.800e-69
Identity = 126/204 (61.76%), Postives = 157/204 (76.96%), Query Frame = 3
Query:   12 RLPRQLSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGH-KWDVMVDLFFYR 620
            +LP   +    DI+M+LAA+ HLG+KN    ME Y++K R DG+ +IN+GKTWEK+ +AAR+I AIENP DI V SARPYGQRAVLKFA +T A AIAGR TPG FTN +  SF EPRL+I+TDPRTD Q IKEA+  NIP IA CDTDSP  +VD+ IP NNKG+H+IG ++WLLAR VL++RGT+     +WDV+VDL+FYR
Sbjct:    5 QLPPIFNPTPQDIEMLLAAQCHLGSKNLQVHMEPYLWKTRPDGVNVINIGKTWEKILLAARIIAAIENPADICVISARPYGQRAVLKFASHTGATAIAGRFTPGNFTNYITRSFKEPRLIIVTDPRTDAQAIKEASYVNIPVIALCDTDSPTEFVDVAIPTNNKGRHAIGLIWWLLAREVLRLRGTLATRETEWDVVVDLYFYR 208          
BLAST of CF832355 vs. ExPASy Swiss-Prot
Match: RSSA_SUBDO (40S ribosomal protein SA OS=Suberites domuncula PE=2 SV=1)

HSP 1 Score: 259.61 bits (662), Expect = 1.280e-68
Identity = 124/198 (62.63%), Postives = 153/198 (77.27%), Query Frame = 3
Query:   27 LSQKEADIQMMLAAEVHLGTKNCDFQMERYVFKRRNDGIYIINLGKTWEKLQMAARVIVAIENPGDIIVQSARPYGQRAVLKFAKYTHAHAIAGRHTPGTFTNQMQTSFNEPRLLILTDPRTDHQPIKEAALGNIPTIAFCDTDSPMRYVDIGIPANNKGKHSIGCLFWLLARMVLQMRGTIRPGHKWDVMVDLFFYR 620
            LS KE D+  +LAA  HLG  N D QM +YVFK + DG+ IIN+ KTWEKL +AARVI AIENP D+ V + +P+GQRA+LKFA YT A  IAGR TPGTFTNQ+Q +F EPRLLI++D R+DHQPI EAA  NIP IAFC+T+SP+RY+D+ IP NN GK+S+G ++WLL R VL++RGTI     W+VM DLFFYR
Sbjct:    8 LSMKEDDVTKLLAAGTHLGDSNVDIQMAQYVFKTKGDGVPIINVRKTWEKLLLAARVIAAIENPADVCVLANKPFGQRAILKFAHYTGAFPIAGRFTPGTFTNQIQKAFREPRLLIVSDARSDHQPITEAAYVNIPVIAFCNTNSPLRYIDVAIPCNNMGKNSLGLMWWLLCREVLRLRGTISRELPWEVMPDLFFYR 205          
The following BLAST results are available for this feature:
BLAST of CF832355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 199
Match NameE-valueIdentityDescription
RSSA_ORNPR1.975e-6961.6240S ribosomal protein SA OS=Ornithodoros parkeri P... [more]
RSSA_MAGGR2.579e-6961.0840S ribosomal protein S0 OS=Magnaporthe grisea GN=... [more]
RSSA_AJECG3.368e-6961.5840S ribosomal protein S0 OS=Ajellomyces capsulata ... [more]
RSSA_AJEDS4.399e-6961.5840S ribosomal protein S0 OS=Ajellomyces dermatitid... [more]
RSSA_AJEDR4.399e-6961.5840S ribosomal protein S0 OS=Ajellomyces dermatitid... [more]
RSSA_NECH77.503e-6961.0840S ribosomal protein S0 OS=Nectria haematococca (... [more]
RSSA_ASPTN9.800e-6961.7640S ribosomal protein S0 OS=Aspergillus terreus (s... [more]
RSSA_ASPFU9.800e-6961.7640S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]
RSSA_ASPFC9.800e-6961.7640S ribosomal protein S0 OS=Aspergillus fumigatus ... [more]
RSSA_SUBDO1.280e-6862.6340S ribosomal protein SA OS=Suberites domuncula PE... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01L18_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01L18, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832355 ID=CF832355; Name=CF832355; organism=Citrus sinensis; type=EST; length=743bp
CGGAACAGCAACGGCTCCCGAGGCAGCTCTCTCAGAAAGAGGCTGACATT
CAGATGATGTTAGCCGCCGAAGTACATTTGGGTACTAAGAACTGTGACTT
CCAAATGGAACGTTACGTGTTCAAGCGCCGAAACGATGGAATTTATATTA
TCAATCTTGGCAAGACTTGGGAGAAGCTACAGATGGCGGCCAGGGTTATC
GTAGCCATTGAAAACCCTGGGGACATTATTGTCCAATCAGCTAGACCCTA
TGGACAGCGAGCTGTGTTGAAGTTTGCAAAGTACACTCACGCCCATGCCA
TTGCTGGCAGGCACACTCCTGGTACATTTACCAATCAAATGCAAACATCA
TTCAATGAGCCCCGACTTCTCATTCTAACAGATCCACGAACAGACCATCA
GCCAATTAAGGAAGCTGCTCTTGGAAACATTCCCACCATTGCCTTTTGTG
ACACTGACTCACCTATGCGTTATGTTGATATTGGCATTCCTGCCAATAAC
AAGGGCAAACACAGCATTGGGTGTCTCTTCTGGCTTTTGGCTAGAATGGT
TCTCCAGATGCGCGGCACTATTCGTCCTGGCCACAAGTGGGATGTGATGG
TCGATCTGTTCTTCTACAGGGAGCCAGAAGAAACCAAGCAGGCTGAAGAA
GAAGAAACTGCTGCTATTGATTATGCTACAGCAGAGTACAGCATGAATCT
TACCAGTGGTGAGCAATGGCCTTCCCAAATTGCTGATGGTGGG
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