CF832366

Overview
NameCF832366
Unique NameCF832366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPAL (Ubiquitin OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_LINUS (Ubiquitin OS=Linum usitatissimum PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_HORVU (Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_HELAN (Ubiquitin OS=Helianthus annuus PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_DESAN (Ubiquitin OS=Deschampsia antarctica PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_DAUCA (Ubiquitin OS=Daucus carota PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_BRARA (Ubiquitin OS=Brassica rapa PE=3 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
[Close]
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_AVESA (Ubiquitin OS=Avena sativa PE=1 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.677e-31
Identity = 70/76 (92.11%), Postives = 71/76 (93.42%), Query Frame = -2 
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITLEVESS TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR LAD+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 76
The following BLAST results are available for this feature:
BLAST of CF832366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_MAIZE3.677e-3192.11Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO3.677e-3192.11Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]
UBIQ_LUPAL3.677e-3192.11Ubiquitin OS=Lupinus albus PE=3 SV=1[more]
UBIQ_LINUS3.677e-3192.11Ubiquitin OS=Linum usitatissimum PE=3 SV=1[more]
UBIQ_HORVU3.677e-3192.11Ubiquitin OS=Hordeum vulgare GN=MUB1 PE=3 SV=1[more]
UBIQ_HELAN3.677e-3192.11Ubiquitin OS=Helianthus annuus PE=3 SV=1[more]
UBIQ_DESAN3.677e-3192.11Ubiquitin OS=Deschampsia antarctica PE=2 SV=1[more]
UBIQ_DAUCA3.677e-3192.11Ubiquitin OS=Daucus carota PE=3 SV=1[more]
UBIQ_BRARA3.677e-3192.11Ubiquitin OS=Brassica rapa PE=3 SV=1[more]
UBIQ_AVESA3.677e-3192.11Ubiquitin OS=Avena sativa PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832366 ID=CF832366; Name=CF832366; organism=Citrus sinensis; type=EST; length=645bp
AAAACAGATAACCATTTAATTCCATTGGTCAAGCAAACAAGTATATAGTC
AAACAAAATTACCAGAGAGTCGTAATTTTTGAACCACAAAAACCATAGTA
ATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCGATCAATCA
CCGCCAGCCTTCTGGTAAACATAGGGGAGTCCACACTTGCCGCAGTAGTG
CCTGGAAAAGTGGTTAGCCATGAAGGTGCCGGCTCCACACTCAGCATTCG
GACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGACCTTGTAA
AACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTTTT
CGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACCACGGAGAC
GGAGGACGAGGGGGAGTGTTGACTCCTTTTGGATGTTGAAGTCGGCTAGG
GGTCTGCCGTCCTCGAGCTGCTTTCCGGGGAAAATGAGACGCTGCTGGTC
CGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGACGATGG
TGCCCGATGATTCTACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTTTTC
ACGAAGATCTGCATGGCTGCCGATGAGGAGAGACCCAGCAAATTT
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