CF832366

Overview
NameCF832366
Unique NameCF832366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length645
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 7.667e-29
Identity = 65/76 (85.53%), Postives = 69/76 (90.79%), Query Frame = -2
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTITL+VE S +I NVK KIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_LEITA (Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 8.477e-28
Identity = 64/76 (84.21%), Postives = 67/76 (88.16%), Query Frame = -2
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTG TI LEVE S TI NVKAKIQDKEGIPPDQQRLIF  KQLE+GR L+D+NIQKESTL LVLRLRGG
Sbjct:    1 MQIFVKTLTGTTIALEVEPSDTIENVKAKIQDKEGIPPDQQRLIFADKQLEEGRTLSDYNIQKESTLHLVLRLRGG 76          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_SOLTU (40S ribosomal protein S27a OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.224e-26
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = -2
Query:  147 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQKAGGD 317
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHF RHYCGKCGL YVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_SOLLC (40S ribosomal protein S27a OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.224e-26
Identity = 53/57 (92.98%), Postives = 54/57 (94.74%), Query Frame = -2
Query:  147 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQKAGGD 317
            LAVLQFYKVDD+GKVQRLRKECPNAECGAGTFMANHF RHYCGKCGL YVY KAGGD
Sbjct:   24 LAVLQFYKVDDTGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYNKAGGD 80          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 56/76 (73.68%), Postives = 63/76 (82.89%), Query Frame = -2
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIFVKTLTGKTIT+E E   T+  VK KI DKEG+P DQQRLI+ GKQLED + LAD+NIQKESTL +VLRLRGG
Sbjct:    1 MQIFVKTLTGKTITVETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMVLRLRGG 76          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 54/76 (71.05%), Postives = 64/76 (84.21%), Query Frame = -2
Query:  387 MQIFVKTLTGKTITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLRGG 614
            MQIF+KTLTGKTIT E E + T+ ++K KI DKEG+P DQQRLIF GKQLED + +AD+NIQKESTL +VLRLRGG
Sbjct:    1 MQIFIKTLTGKTITAETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMVLRLRGG 76          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: RS27A_LUPAL (40S ribosomal protein S27a OS=Lupinus albus PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.552e-24
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = -2
Query:  156 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQKA 317
            LAVLQFYKVDDSGKVQRLRKECPN ECGAGTFMANHF RHYCGKCG  YVYQKA
Sbjct:   24 LAVLQFYKVDDSGKVQRLRKECPNTECGAGTFMANHFDRHYCGKCGKTYVYQKA 77          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: R27AB_ARATH (40S ribosomal protein S27a-2 OS=Arabidopsis thaliana GN=UBQ6 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.654e-23
Identity = 49/55 (89.09%), Postives = 50/55 (90.91%), Query Frame = -2
Query:  153 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQKAG 317
            LAVLQFYKVD SGKVQRLRKECPNA CGAGTFMA+HF RHYCGKCGL YVYQK G
Sbjct:   24 LAVLQFYKVDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: R27AC_ARATH (40S ribosomal protein S27a-3 OS=Arabidopsis thaliana GN=UBQ5 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 2.161e-23
Identity = 48/55 (87.27%), Postives = 50/55 (90.91%), Query Frame = -2
Query:  153 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFSRHYCGKCGLPYVYQKAG 317
            LAVLQFYK+D SGKVQRLRKECPNA CGAGTFMA+HF RHYCGKCGL YVYQK G
Sbjct:   24 LAVLQFYKIDGSGKVQRLRKECPNATCGAGTFMASHFDRHYCGKCGLTYVYQKEG 78          
BLAST of CF832366 vs. ExPASy Swiss-Prot
Match: UBIQ_LUMTE (Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 SV=2)

HSP 1 Score: 106.686 bits (265), Expect = 1.072e-22
Identity = 55/63 (87.30%), Postives = 57/63 (90.48%), Query Frame = -2
Query:  393 TITLEVESSGTIVNVKAKIQDKEGIPPDQQRLIFPGKQLEDGRPLADFNIQKESTLPLVLRLR 581
            TITLEVE S TI NVKAKIQDKEGIPPDQQRLIF GKQLEDGR L+D+NIQKESTL LVLRLR
Sbjct:    1 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLR 63          
The following BLAST results are available for this feature:
BLAST of CF832366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 122
Match NameE-valueIdentityDescription
UBIQ_PHYIN7.667e-2985.53Ubiquitin OS=Phytophthora infestans PE=1 SV=1[more]
UBIQ_LEITA8.477e-2884.21Ubiquitin OS=Leishmania tarentolae GN=UB-EP52 PE=3... [more]
RS27A_SOLTU1.224e-2692.9840S ribosomal protein S27a OS=Solanum tuberosum GN... [more]
RS27A_SOLLC1.224e-2692.9840S ribosomal protein S27a OS=Solanum lycopersicum... [more]
UBIL_NPVOP2.552e-2473.68Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC2.552e-2471.05Ubiquitin-like protein OS=Autographa californica n... [more]
RS27A_LUPAL2.552e-2492.5940S ribosomal protein S27a OS=Lupinus albus PE=3 S... [more]
R27AB_ARATH1.654e-2389.0940S ribosomal protein S27a-2 OS=Arabidopsis thalia... [more]
R27AC_ARATH2.161e-2387.2740S ribosomal protein S27a-3 OS=Arabidopsis thalia... [more]
UBIQ_LUMTE1.072e-2287.30Ubiquitin (Fragment) OS=Lumbricus terrestris PE=1 ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_f Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832366 ID=CF832366; Name=CF832366; organism=Citrus sinensis; type=EST; length=645bp
AAAACAGATAACCATTTAATTCCATTGGTCAAGCAAACAAGTATATAGTC
AAACAAAATTACCAGAGAGTCGTAATTTTTGAACCACAAAAACCATAGTA
ATTAATACTAATTAAAAATAGCAAAACAACCACCTAATCTCGATCAATCA
CCGCCAGCCTTCTGGTAAACATAGGGGAGTCCACACTTGCCGCAGTAGTG
CCTGGAAAAGTGGTTAGCCATGAAGGTGCCGGCTCCACACTCAGCATTCG
GACACTCCTTCCTCAGCCTCTGGACCTTTCCAGAATCATCGACCTTGTAA
AACTGCAAGACGGCGAGCTTGACCTTCTTCTTCTTGTGCTTGATCTTTTT
CGGCTTGGTGTAGGTCTTCTTCTTACGCTTCTTCGCGCCACCACGGAGAC
GGAGGACGAGGGGGAGTGTTGACTCCTTTTGGATGTTGAAGTCGGCTAGG
GGTCTGCCGTCCTCGAGCTGCTTTCCGGGGAAAATGAGACGCTGCTGGTC
CGGTGGAATCCCCTCCTTGTCCTGGATCTTGGCCTTGACATTGACGATGG
TGCCCGATGATTCTACCTCTAGGGTTATGGTCTTTCCCGTTAGGGTTTTC
ACGAAGATCTGCATGGCTGCCGATGAGGAGAGACCCAGCAAATTT
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