CF832367

Overview
NameCF832367
Unique NameCF832367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_WHEAT (Ubiquitin OS=Triticum aestivum PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_SOYBN (Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLTU (Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_SOLLC (Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_PETCR (Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_PEA (Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_ORYSJ (Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_NICSY (Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_MAIZE (Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_LUPPO (Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
The following BLAST results are available for this feature:
BLAST of CF832367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
UBIQ_WHEAT4.852e-2296.36Ubiquitin OS=Triticum aestivum PE=3 SV=1[more]
UBIQ_SOYBN4.852e-2296.36Ubiquitin OS=Glycine max GN=SUBI-1 PE=3 SV=1[more]
UBIQ_SOLTU4.852e-2296.36Ubiquitin OS=Solanum tuberosum GN=UBI3 PE=3 SV=1[more]
UBIQ_SOLLC4.852e-2296.36Ubiquitin OS=Solanum lycopersicum GN=UBI3 PE=3 SV=... [more]
UBIQ_PETCR4.852e-2296.36Ubiquitin OS=Petroselinum crispum GN=PCUBI4-1 PE=3... [more]
UBIQ_PEA4.852e-2296.36Ubiquitin OS=Pisum sativum GN=PU1 PE=3 SV=1[more]
UBIQ_ORYSJ4.852e-2296.36Ubiquitin OS=Oryza sativa subsp. japonica GN=UBQ1 ... [more]
UBIQ_NICSY4.852e-2296.36Ubiquitin OS=Nicotiana sylvestris GN=UBICEP52-7 PE... [more]
UBIQ_MAIZE4.852e-2296.36Ubiquitin OS=Zea mays GN=UBF9 PE=3 SV=1[more]
UBIQ_LUPPO4.852e-2296.36Ubiquitin OS=Lupinus polyphyllus PE=3 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832367 ID=CF832367; Name=CF832367; organism=Citrus sinensis; type=EST; length=618bp
GAAATTTGCTGCGTTTCTCCTCATCTGCAGCCATGCAGATCATCTTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CTACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCTAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAACACCTACACCAAGCCGAAAA
AAATCAAGCACGAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAAAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAAGTGGTTGTTTTGCTATTTTTAATTAATATTAATTACT
ATGGTTGTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACT
ATATACTTGTTTGCTTGA
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