CF832367

Overview
NameCF832367
Unique NameCF832367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_SCHPO (40S ribosomal protein S27a OS=Schizosaccharomyces pombe GN=ubi3 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 473
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_CAEBR (40S ribosomal protein S27a OS=Caenorhabditis briggsae GN=ubl-1 PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 4.117e-13
Identity = 32/54 (59.26%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVL++YKVD++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKVDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_CAEEL (40S ribosomal protein S27a OS=Caenorhabditis elegans GN=ubl-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 5.377e-13
Identity = 31/54 (57.41%), Postives = 39/54 (72.22%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVL++YK+D++GK+ RLRKEC    CG G FMA H +RHYCG+C  T V   A
Sbjct:   24 LAVLKYYKIDENGKITRLRKECQQPSCGGGVFMAQHANRHYCGRCHDTLVVDTA 77          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS37_YEAST (40S ribosomal protein S31 OS=Saccharomyces cerevisiae GN=UBI3 PE=1 SV=2)

HSP 1 Score: 73.1738 bits (178), Expect = 1.198e-12
Identity = 32/49 (65.31%), Postives = 36/49 (73.47%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTY 476
            LAVL +YKVD  GKV +LR+EC N  CGAG F+ANH DR YCGKC   Y
Sbjct:   24 LAVLSYYKVDAEGKVTKLRRECSNPTCGAGVFLANHKDRLYCGKCHSVY 72          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RUB1_DESAN (NEDD8-like protein RUB1 OS=Deschampsia antarctica GN=RUB1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 7.765e-12
Identity = 33/55 (60.00%), Postives = 43/55 (78.18%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            ++E +DTI  VK ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   16 DIEPTDTIDRVKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RUB2_ORYSJ (NEDD8-like protein RUB2 OS=Oryza sativa subsp. japonica GN=RUB2 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            ++E +DTI  +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   16 DIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RUB1_ORYSJ (NEDD8-like protein RUB1 OS=Oryza sativa subsp. japonica GN=RUB1 PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            ++E +DTI  +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   16 DIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RUB1_ARATH (NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN=RUB1 PE=1 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 32/55 (58.18%), Postives = 43/55 (78.18%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            ++E +DTI  +K ++++KEGIPP QQRLI+AGKQL D +T  DYNI+  S LHLV
Sbjct:   16 DIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADDKTAKDYNIEGGSVLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_DICDI (40S ribosomal protein S27a OS=Dictyostelium discoideum GN=ubqC PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.014e-11
Identity = 29/50 (58.00%), Postives = 38/50 (76.00%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYV 479
            LAVL++YK D++GK++R+ +ECP   CGAG FMA H +R YCGKC  T V
Sbjct:   25 LAVLKYYKFDENGKIKRVLRECPAETCGAGVFMAQHANRQYCGKCHSTLV 74          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: NEDD8_DROME (NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.854e-11
Identity = 29/55 (52.73%), Postives = 42/55 (76.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            ++E +D +  +K ++++KEGIPP QQRLIF+GKQ+ D +T ADY +Q  S LHLV
Sbjct:   16 DIEPTDKVDRIKERVEEKEGIPPQQQRLIFSGKQMNDDKTAADYKVQGGSVLHLV 70          
The following BLAST results are available for this feature:
BLAST of CF832367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RS27A_SCHPO3.152e-1370.8340S ribosomal protein S27a OS=Schizosaccharomyces ... [more]
RS27A_CAEBR4.117e-1359.2640S ribosomal protein S27a OS=Caenorhabditis brigg... [more]
RS27A_CAEEL5.377e-1357.4140S ribosomal protein S27a OS=Caenorhabditis elega... [more]
RS37_YEAST1.198e-1265.3140S ribosomal protein S31 OS=Saccharomyces cerevis... [more]
RUB1_DESAN7.765e-1260.00NEDD8-like protein RUB1 OS=Deschampsia antarctica ... [more]
RUB2_ORYSJ1.014e-1158.18NEDD8-like protein RUB2 OS=Oryza sativa subsp. jap... [more]
RUB1_ORYSJ1.014e-1158.18NEDD8-like protein RUB1 OS=Oryza sativa subsp. jap... [more]
RUB1_ARATH1.014e-1158.18NEDD8-like protein RUB1 OS=Arabidopsis thaliana GN... [more]
RS27A_DICDI1.014e-1158.0040S ribosomal protein S27a OS=Dictyostelium discoi... [more]
NEDD8_DROME3.854e-1152.73NEDD8 OS=Drosophila melanogaster GN=Nedd8 PE=1 SV=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832367 ID=CF832367; Name=CF832367; organism=Citrus sinensis; type=EST; length=618bp
GAAATTTGCTGCGTTTCTCCTCATCTGCAGCCATGCAGATCATCTTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CTACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCTAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAACACCTACACCAAGCCGAAAA
AAATCAAGCACGAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAAAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAAGTGGTTGTTTTGCTATTTTTAATTAATATTAATTACT
ATGGTTGTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACT
ATATACTTGTTTGCTTGA
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