CF832367

Overview
NameCF832367
Unique NameCF832367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_ARATH (Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 53/55 (96.36%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_ORYSJ (40S ribosomal protein S27a OS=Oryza sativa subsp. japonica GN=UBQ6 PE=3 SV=2)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 50/56 (89.29%), Postives = 52/56 (92.86%), Query Frame = 3
Query:  330 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 491
            LAVLQFYKVDD+ GKV RLRKECPN +CGAGTFMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNNDCGAGTFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_MAIZE (40S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 4.852e-22
Identity = 50/56 (89.29%), Postives = 51/56 (91.07%), Query Frame = 3
Query:  330 LAVLQFYKVDDS-GKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVY-QKA 491
            LAVLQFYKVDD+ GKV RLRKECPN ECGAG FMANHFDRHYCGKCGLTYVY QKA
Sbjct:   24 LAVLQFYKVDDATGKVTRLRKECPNTECGAGVFMANHFDRHYCGKCGLTYVYNQKA 79          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_COPCO (Ubiquitin OS=Coprinus congregatus PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.081e-21
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_ACECL (Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.081e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDT+ NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTVENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_ACACA (Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.412e-21
Identity = 52/55 (94.55%), Postives = 52/55 (94.55%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVK KIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 EVESSDTIENVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_GEOCY (Ubiquitin OS=Geodia cydonium PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE+SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_CAEEL (Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE+SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: R27AA_ARATH (40S ribosomal protein S27a-1 OS=Arabidopsis thaliana GN=UBQ15 PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.844e-21
Identity = 44/54 (81.48%), Postives = 49/54 (90.74%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVLQFYKVD SGKVQRL+KECP+  CG GTFMA+HFDRHYCGKCG TYV++KA
Sbjct:   24 LAVLQFYKVDGSGKVQRLKKECPSVSCGPGTFMASHFDRHYCGKCGTTYVFKKA 77          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_YEAST (Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70          
The following BLAST results are available for this feature:
BLAST of CF832367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
UBIQ_ARATH4.852e-2296.36Ubiquitin OS=Arabidopsis thaliana GN=UBQ1 PE=1 SV=... [more]
RS27A_ORYSJ4.852e-2289.2940S ribosomal protein S27a OS=Oryza sativa subsp. ... [more]
RS27A_MAIZE4.852e-2289.2940S ribosomal protein S27a OS=Zea mays GN=UBF9 PE=... [more]
UBIQ_COPCO1.081e-2194.55Ubiquitin OS=Coprinus congregatus PE=1 SV=1[more]
UBIQ_ACECL1.081e-2192.73Ubiquitin OS=Acetabularia cliftonii PE=3 SV=1[more]
UBIQ_ACACA1.412e-2194.55Ubiquitin OS=Acanthamoeba castellanii PE=3 SV=1[more]
UBIQ_GEOCY1.844e-2192.73Ubiquitin OS=Geodia cydonium PE=3 SV=1[more]
UBIQ_CAEEL1.844e-2192.73Ubiquitin OS=Caenorhabditis elegans GN=ubq-1 PE=1 ... [more]
R27AA_ARATH1.844e-2181.4840S ribosomal protein S27a-1 OS=Arabidopsis thalia... [more]
UBIQ_YEAST2.408e-2192.73Ubiquitin OS=Saccharomyces cerevisiae GN=UBI1 PE=1... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832367 ID=CF832367; Name=CF832367; organism=Citrus sinensis; type=EST; length=618bp
GAAATTTGCTGCGTTTCTCCTCATCTGCAGCCATGCAGATCATCTTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CTACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCTAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAACACCTACACCAAGCCGAAAA
AAATCAAGCACGAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAAAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAAGTGGTTGTTTTGCTATTTTTAATTAATATTAATTACT
ATGGTTGTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACT
ATATACTTGTTTGCTTGA
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