CF832367

Overview
NameCF832367
Unique NameCF832367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10133 contig Csv1_Contig10133:14..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE+SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL +GRTLADYNIQKESTLHLV
Sbjct:   16 EVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_SCHPO (Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_KLULA (Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_CRYNE (Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_CANAL (Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVK+KIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_AGLNE (Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.408e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVK KIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVESSDTIENVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_XENLA (Ubiquitin OS=Xenopus laevis PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.145e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_SPOFR (Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.145e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.145e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_RAT (Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.145e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
The following BLAST results are available for this feature:
BLAST of CF832367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
UBIQ_TRYBB2.408e-2192.73Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1[more]
UBIQ_SCHPO2.408e-2192.73Ubiquitin OS=Schizosaccharomyces pombe GN=ubi1 PE=... [more]
UBIQ_KLULA2.408e-2192.73Ubiquitin OS=Kluyveromyces lactis GN=ubi3 PE=1 SV=... [more]
UBIQ_CRYNE2.408e-2192.73Ubiquitin OS=Cryptococcus neoformans GN=UBI1 PE=1 ... [more]
UBIQ_CANAL2.408e-2192.73Ubiquitin OS=Candida albicans GN=UBI1 PE=1 SV=1[more]
UBIQ_AGLNE2.408e-2192.73Ubiquitin OS=Aglaothamnion neglectum PE=3 SV=1[more]
UBIQ_XENLA3.145e-2192.73Ubiquitin OS=Xenopus laevis PE=1 SV=1[more]
UBIQ_SPOFR3.145e-2192.73Ubiquitin OS=Spodoptera frugiperda PE=3 SV=1[more]
UBIQ_SHEEP3.145e-2192.73Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2[more]
UBIQ_RAT3.145e-2192.73Ubiquitin OS=Rattus norvegicus GN=Rps27a PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832367 ID=CF832367; Name=CF832367; organism=Citrus sinensis; type=EST; length=618bp
GAAATTTGCTGCGTTTCTCCTCATCTGCAGCCATGCAGATCATCTTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CTACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCTAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAACACCTACACCAAGCCGAAAA
AAATCAAGCACGAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAAAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAAGTGGTTGTTTTGCTATTTTTAATTAATATTAATTACT
ATGGTTGTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACT
ATATACTTGTTTGCTTGA
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