CF832367

Overview
NameCF832367
Unique NameCF832367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_CANFA (Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.145e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 101.679 bits (252), Expect = 3.145e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.145e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.108e-21
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            +VE+SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 DVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_NEUCR (Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 4.108e-21
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVESSDTI NVK KIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVESSDTIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 7.007e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            +VE SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 DVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SD+I NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_LEIMA (Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SDTI NVKAKIQDKEGIPPDQQRLIFAGKQL +GRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLSDYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_EUPEU (Ubiquitin OS=Euplotes eurystomus PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 50/55 (90.91%), Postives = 51/55 (92.73%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            +VE SDTI NVK KIQDKEGIPPDQQRLIFAGKQL DGRTLADYNIQKESTLHLV
Sbjct:   16 DVEQSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLV 70
[Close]
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 9.151e-21
Identity = 50/55 (90.91%), Postives = 52/55 (94.55%), Query Frame = 3 
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            EVE SD+I NVKAKIQDKEGIPPDQQRLIFAGKQL DGRTL+DYNIQKESTLHLV
Sbjct:   16 EVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLV 70
The following BLAST results are available for this feature:
BLAST of CF832367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
UBIQ_CANFA3.145e-2192.73Ubiquitin OS=Canis familiaris GN=UBA52 PE=3 SV=1[more]
UBIQ_CAMDR3.145e-2192.73Ubiquitin OS=Camelus dromedarius PE=3 SV=2[more]
UBIQ_BOVIN3.145e-2192.73Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1[more]
UBIQ_TETPY4.108e-2190.91Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ... [more]
UBIQ_NEUCR4.108e-2192.73Ubiquitin OS=Neurospora crassa GN=ubi-1 PE=1 SV=1[more]
UBIQ_EIMBO7.007e-2190.91Ubiquitin OS=Eimeria bovis PE=2 SV=1[more]
UBIQ_STRPU9.151e-2190.91Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV... [more]
UBIQ_LEIMA9.151e-2190.91Ubiquitin OS=Leishmania major GN=UB-EP52 PE=3 SV=1[more]
UBIQ_EUPEU9.151e-2190.91Ubiquitin OS=Euplotes eurystomus PE=3 SV=1[more]
UBIQ_ENCCU9.151e-2190.91Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832367 ID=CF832367; Name=CF832367; organism=Citrus sinensis; type=EST; length=618bp
GAAATTTGCTGCGTTTCTCCTCATCTGCAGCCATGCAGATCATCTTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CTACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCTAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAACACCTACACCAAGCCGAAAA
AAATCAAGCACGAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAAAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAAGTGGTTGTTTTGCTATTTTTAATTAATATTAATTACT
ATGGTTGTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACT
ATATACTTGTTTGCTTGA
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