CF832367

Overview
NameCF832367
Unique NameCF832367
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length618
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10133 contig Csv1_Contig10133:14..631. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_MOUSE (40S ribosomal protein S27a OS=Mus musculus GN=Rps27a PE=2 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.255e-18
Identity = 37/53 (69.81%), Postives = 46/53 (86.79%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 488
            LAVL++YKVD++GK+ RLR+ECP+ ECGAG FM +HFDRHYCGKC LTY + K
Sbjct:   24 LAVLKYYKVDENGKISRLRRECPSDECGAGVFMGSHFDRHYCGKCCLTYCFNK 76          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_DROME (40S ribosomal protein S27a OS=Drosophila melanogaster GN=RpS27A PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 3.599e-17
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 488
            LAVL++YKVD++GK+ RLR+ECP   CGAG FMA H DRHYCGKC LT+V+ K
Sbjct:   24 LAVLKYYKVDENGKIHRLRRECPGENCGAGVFMAAHEDRHYCGKCNLTFVFSK 76          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_NEUCR (40S ribosomal protein S27a OS=Neurospora crassa GN=ubi-3 PE=3 SV=3)

HSP 1 Score: 83.5741 bits (205), Expect = 8.864e-16
Identity = 35/54 (64.81%), Postives = 44/54 (81.48%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQKA 491
            LAVL++YKVD  GK++RLR+ECPN  CGAG FMA   DR YCG+C LTYV++K+
Sbjct:   24 LAVLKYYKVDSDGKIERLRRECPNETCGAGVFMAAMQDRQYCGRCHLTYVFEKS 77          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIL_NPVOP (Ubiquitin-like protein OS=Orgyia pseudotsugata multicapsid polyhedrosis virus GN=V-UBI PE=3 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.512e-15
Identity = 40/55 (72.73%), Postives = 45/55 (81.82%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            E E  DT+  VK KI DKEG+P DQQRLI+AGKQL D +TLADYNIQKESTLH+V
Sbjct:   16 ETEPGDTVGQVKQKIADKEGVPVDQQRLIYAGKQLEDAQTLADYNIQKESTLHMV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: UBIL_NPVAC (Ubiquitin-like protein OS=Autographa californica nuclear polyhedrosis virus GN=V-UBI PE=3 SV=2)

HSP 1 Score: 82.0333 bits (201), Expect = 2.579e-15
Identity = 38/55 (69.09%), Postives = 47/55 (85.45%), Query Frame = 3
Query:   78 EVESSDTIYNVKAKIQDKEGIPPDQQRLIFAGKQL*DGRTLADYNIQKESTLHLV 242
            E E ++T+ ++K KI DKEG+P DQQRLIFAGKQL D +T+ADYNIQKESTLH+V
Sbjct:   16 ETEPAETVADLKQKIADKEGVPVDQQRLIFAGKQLEDSKTMADYNIQKESTLHMV 70          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_KLULA (40S ribosomal protein S27a OS=Kluyveromyces lactis GN=ubi3 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.724e-14
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQK 488
            LAVL +YKVDD GKV +LRKECPN  CG G F+ANH DR YCGKC  T+  QK
Sbjct:   24 LAVLNYYKVDDEGKVAKLRKECPN--CGPGIFLANHGDRFYCGKCHSTFATQK 74          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_PLUXY (40S ribosomal protein S27a OS=Plutella xylostella PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 8.296e-14
Identity = 33/52 (63.46%), Postives = 42/52 (80.77%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 485
            LAVL+FYKVD++GK+ RLR+EC + +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTSEQCGAGVFMAVMEDRHYCGKCHRTMVFK 75          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_SPOFR (40S ribosomal protein S27a OS=Spodoptera frugiperda PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 485
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27A_MANSE (40S ribosomal protein S27a OS=Manduca sexta PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.084e-13
Identity = 33/52 (63.46%), Postives = 41/52 (78.85%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLTYVYQ 485
            LAVL+FYKVD++GK+ RLR+EC   +CGAG FMA   DRHYCGKC  T V++
Sbjct:   24 LAVLRFYKVDENGKIHRLRRECTGEQCGAGVFMAVMEDRHYCGKCHSTMVFK 75          
BLAST of CF832367 vs. ExPASy Swiss-Prot
Match: RS27B_SCHPO (40S ribosomal protein S27b OS=Schizosaccharomyces pombe GN=ubi5 PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.152e-13
Identity = 34/48 (70.83%), Postives = 40/48 (83.33%), Query Frame = 3
Query:  330 LAVLQFYKVDDSGKVQRLRKECPNAECGAGTFMANHFDRHYCGKCGLT 473
            LAVL++YKV+D G V+RLR+ECPN  CGA TFMANH DR YCG+C LT
Sbjct:   24 LAVLKYYKVEDDGSVKRLRRECPN--CGASTFMANHKDRLYCGRCHLT 69          
The following BLAST results are available for this feature:
BLAST of CF832367 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 112
Match NameE-valueIdentityDescription
RS27A_MOUSE3.255e-1869.8140S ribosomal protein S27a OS=Mus musculus GN=Rps2... [more]
RS27A_DROME3.599e-1767.9240S ribosomal protein S27a OS=Drosophila melanogas... [more]
RS27A_NEUCR8.864e-1664.8140S ribosomal protein S27a OS=Neurospora crassa GN... [more]
UBIL_NPVOP1.512e-1572.73Ubiquitin-like protein OS=Orgyia pseudotsugata mul... [more]
UBIL_NPVAC2.579e-1569.09Ubiquitin-like protein OS=Autographa californica n... [more]
RS27A_KLULA3.724e-1467.9240S ribosomal protein S27a OS=Kluyveromyces lactis... [more]
RS27A_PLUXY8.296e-1463.4640S ribosomal protein S27a OS=Plutella xylostella ... [more]
RS27A_SPOFR1.084e-1363.4640S ribosomal protein S27a OS=Spodoptera frugiperd... [more]
RS27A_MANSE1.084e-1363.4640S ribosomal protein S27a OS=Manduca sexta PE=3 S... [more]
RS27B_SCHPO3.152e-1370.8340S ribosomal protein S27b OS=Schizosaccharomyces ... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M02_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832367 ID=CF832367; Name=CF832367; organism=Citrus sinensis; type=EST; length=618bp
GAAATTTGCTGCGTTTCTCCTCATCTGCAGCCATGCAGATCATCTTGAAA
ACCCTAACGGGAAAGACCATAACCCTAGAGGTCGAATCATCGGACACCAT
CTACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGGATTCCACCGGACC
AGCAGCGTCTCATCTTCGCCGGAAAGCAGCTCTAGGACGGCAGAACCCTA
GCCGACTACAACATCCAAAAGGAGTCAACACTCCACCTCGTCCTCCGTCT
CCGTGGTGGCGCGAAGAAGCGTAAGAAGAACACCTACACCAAGCCGAAAA
AAATCAAGCACGAGAAGAAGAAGGTCAAGCTCGCCGTCTTGCAGTTTTAC
AAGGTCGATGATTCTGGAAAGGTCCAAAGGCTGAGGAAGGAGTGTCCGAA
TGCTGAGTGTGGAGCCGGCACCTTCATGGCTAACCACTTTGACAGGCACT
ACTGCGGCAAGTGTGGACTCACCTATGTTTACCAGAAGGCTGGCGGTGAT
TGATCGAGATTAAGTGGTTGTTTTGCTATTTTTAATTAATATTAATTACT
ATGGTTGTTGTGGTTCAAAAATTATGACTCTTTCGTAATTTTGTTTGACT
ATATACTTGTTTGCTTGA
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