CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1045..1738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_THISH (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Thioalkalivibrio sp. (strain HL-EbGR7) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.950e-50
Identity = 96/141 (68.09%), Postives = 115/141 (81.56%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQED RE  A + +LNY+ LDG IGCMVNGAGLAMATMD+IKLHGG PANFLDVGG  +  +V EAFK++ SDE V A+ VNIFGGI++CD+IA GI+NA K+V + VPVVVRLEGTNVDQG ++L ESG+ +ITAE L D
Sbjct:  236 TQEDAREARAREHELNYVRLDGNIGCMVNGAGLAMATMDLIKLHGGEPANFLDVGGGTTAARVAEAFKLILSDEAVKAVFVNIFGGIVRCDLIAEGIINAVKEVHVTVPVVVRLEGTNVDQGKQMLAESGLNIITAESLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BREBN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Brevibacillus brevis (strain 47 / JCM 6285 / NBRC 100599) GN=sucC PE=3 SV=1)

HSP 1 Score: 197.208 bits (500), Expect = 6.950e-50
Identity = 96/140 (68.57%), Postives = 115/140 (82.14%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +ED +E+ A+K DL+YI LDG IGCMVNGAGLAMATMDI+K +GG PANFLDVGG A+E +V EAFKI+  DEKV  I VNIFGGIMKCDVIA+G+VNAAKQ+ L  P+VVRLEGTNVD G +IL ESG+ ++ AE + D
Sbjct:  237 EEDEKEIEASKFDLSYIALDGNIGCMVNGAGLAMATMDIVKFYGGDPANFLDVGGGATEEKVTEAFKIILRDEKVKGIFVNIFGGIMKCDVIANGVVNAAKQIKLDKPLVVRLEGTNVDLGKKILNESGLNIVAAESMAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHIME (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhizobium meliloti GN=sucC PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.077e-50
Identity = 96/141 (68.09%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V +AFKI+T+D  V  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +I+ ESG+ +I+A+DLDD
Sbjct:  246 TEEDDKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTQAFKIITADPAVKGILVNIFGGIMKCDVIAEGVLAAVKEVGLKVPLVVRLEGTNVELGKKIINESGLNVISADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BRASO (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium sp. (strain ORS278) GN=sucC PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.077e-50
Identity = 97/141 (68.79%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G+V A K+V LKVP+VVRLEGTNVD G +I+ ESG+ ++ A++LDD
Sbjct:  246 TEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVGGGASKEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKEVGLKVPLVVRLEGTNVDLGKKIISESGLNVLPADNLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BRASB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bradyrhizobium sp. (strain BTAi1 / ATCC BAA-1182) GN=sucC PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.077e-50
Identity = 97/141 (68.79%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G+V A K+V LKVP+VVRLEGTNVD G +I+ ESG+ ++ A++LDD
Sbjct:  246 TEEDAKEIEASKYDLNYVALDGTIGCMVNGAGLAMATMDIIKLYGMEPANFLDVGGGASKEKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKEVGLKVPLVVRLEGTNVDLGKKIISESGLNVLPADNLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BARBK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=sucC PE=3 SV=1)

HSP 1 Score: 196.823 bits (499), Expect = 9.077e-50
Identity = 96/141 (68.09%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++EDP+E+ A+K DL YI LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIM+CDVIA G++ A K+V LKVP+VVRLEGTNV+QG  I+ +SG+ +I+A DLDD
Sbjct:  246 SEEDPKEIEASKHDLAYIALDGMIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTHAFKIITADPNVKGILVNIFGGIMRCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVEQGKAIINDSGLNVISANDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_NITHX (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nitrobacter hamburgensis (strain X14 / DSM 10229) GN=sucC PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.022e-49
Identity = 94/141 (66.67%), Postives = 119/141 (84.40%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++ED +E+ A++ DL+Y+ LDG+IGCMVNGAGLAMATMDIIKL+G +PANFLDVGG A++ +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G+V A KQV L VP+VVRLEGTNVD G +I++ESG+ ++ A+DLDD
Sbjct:  246 SEEDAKEIEASRFDLSYVALDGQIGCMVNGAGLAMATMDIIKLYGMSPANFLDVGGGATKDKVAAAFKIITADPNVKGILVNIFGGIMKCDVIAEGVVAAVKQVGLNVPLVVRLEGTNVDAGKKIIRESGLNVLPADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PSEU5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Pseudomonas stutzeri (strain A1501) GN=sucC PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.641e-49
Identity = 93/142 (65.49%), Postives = 113/142 (79.58%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+Q+DPRE  AAK +LNY+ LDG IGCMVNGAGLAM TMDI+ LHGG PANFLDVGG A+E +V EAFKI+ SD  V A+LVNIFGGI++CD+IA GI+ A ++V +KVPVVVRLEG N D G ++L ESG+ +I A  L D
Sbjct:  235 PSQDDPREAHAAKWELNYVALDGNIGCMVNGAGLAMGTMDIVNLHGGAPANFLDVGGGATEERVTEAFKIILSDSNVAAVLVNIFGGIVRCDMIAEGIIGAVREVGVKVPVVVRLEGNNADLGAKMLSESGLNIIGANSLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_OCHA4 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.449e-49
Identity = 95/141 (67.38%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++ED +E+ A+K DL Y+ LDG IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIMKCDVIA G++ A K+V LKVP+VVRLEGTNV+ G +I+ ESG+ +I+A+DLDD
Sbjct:  246 SEEDEKEIEASKYDLAYVALDGNIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVQGILVNIFGGIMKCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVELGKKIINESGLNVISADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_NITWN (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Nitrobacter winogradskyi (strain Nb-255 / ATCC 25391) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.897 bits (494), Expect = 3.449e-49
Identity = 93/141 (65.96%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++ED +E+ A++ DL+Y+ LDG+IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++ +V  AFKI+T+D  V  IL+NIFGGIMKCDVIA G+V A KQV L VP+VVRLEGTNVD G +I++ESG+ ++ A+DLDD
Sbjct:  246 SEEDAKEIEASRFDLSYVALDGQIGCMVNGAGLAMATMDIIKLYGMAPANFLDVGGGATKDKVAAAFKIITADPNVKGILINIFGGIMKCDVIADGVVAAVKQVGLNVPLVVRLEGTNVDAGKKIIRESGLNVLPADDLDD 386          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_THISH6.950e-5068.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BREBN6.950e-5068.57Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHIME9.077e-5068.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRASO9.077e-5068.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BRASB9.077e-5068.79Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARBK9.077e-5068.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NITHX2.022e-4966.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PSEU52.641e-4965.49Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_OCHA43.449e-4967.38Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_NITWN3.449e-4965.96Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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