CF832371

Overview
NameCF832371
Unique NameCF832371
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length694
Libraries
Library NameType
Ruby Orange Ovary at Anthesis cDNA Librarycdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1011 contig Csv1_Contig1011:1045..1738. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_STRMK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Stenotrophomonas maltophilia (strain K279a) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.505e-49
Identity = 90/141 (63.83%), Postives = 121/141 (85.82%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQEDP EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDPTEVIASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_STRM5 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Stenotrophomonas maltophilia (strain R551-3) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.505e-49
Identity = 90/141 (63.83%), Postives = 121/141 (85.82%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            TQEDP EV A++ D+NY+ +DG IGCMVNGAGLAMATMD+IKL+GG PANFLDVGG A++ +V+EAFK++ S +KV  I VNIFGGI++CD+IA GI+ A K+V +KVPVVVRLEGTNV++G ++L++SGM +I A++++D
Sbjct:  236 TQEDPTEVIASELDINYVTMDGNIGCMVNGAGLAMATMDVIKLNGGEPANFLDVGGGANKQRVIEAFKLILSSDKVEGIFVNIFGGIVRCDMIAEGIIAAVKEVGVKVPVVVRLEGTNVEEGKQLLRDSGMAIIPADNIND 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_PARL1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.505e-49
Identity = 96/141 (68.09%), Postives = 118/141 (83.69%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+EDP EV A+K DLNYI LDG+IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG A++ +V  AFKI+ SD  V  ILVNIFGGIM+CD+IA G++ AAK+V+L VP+VVRLEGTNVD G +I+ ESG+ +I+A++L D
Sbjct:  236 TEEDPAEVEASKYDLNYIKLDGKIGCMVNGAGLAMATMDIIKLYGSEPANFLDVGGGATKEKVTAAFKIILSDPSVEGILVNIFGGIMRCDIIAEGVIAAAKEVSLSVPLVVRLEGTNVDLGKKIMAESGLPIISADNLAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_MESSB (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Mesorhizobium sp. (strain BNC1) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.505e-49
Identity = 94/141 (66.67%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++ED +E+ A+K DL Y+ LDG+IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIM+CDVIA G++ A K+V LKVP+VVRLEGTNVD G +I+ +SG+ +I A+DLDD
Sbjct:  246 SEEDEKEIEASKYDLAYVALDGDIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPNVKGILVNIFGGIMRCDVIAEGVIAAVKEVGLKVPLVVRLEGTNVDLGKKIISQSGLNVIPADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_CAUSK (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Caulobacter sp. (strain K31) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 4.505e-49
Identity = 94/141 (66.67%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++EDP+E+ A+K DL YI LDGEIGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIM+CD+IA G++ A K+V L+VP+VVRLEGTNV+ G +I++ESG+ +I A DL D
Sbjct:  246 SEEDPKEIEASKYDLAYIALDGEIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPAVKGILVNIFGGIMRCDIIAEGVIAAVKEVGLQVPLVVRLEGTNVELGKKIIRESGLNVIAANDLSD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_SACD2 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.884e-49
Identity = 91/142 (64.08%), Postives = 116/142 (81.69%), Query Frame = -2
Query:  268 PTQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 693
            P+QED RE  AAK +LNY+ LDG IGCMVNGAGLAM TMDI+KLHGG PANFLDVGG A++ +VVEAFKI+ SD+ V A+L+NIFGGI++CD+IA G++ A ++V +KVPVVVRLEG N + G ++L +SG+ +I AE L D
Sbjct:  235 PSQEDEREAHAAKWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGQPANFLDVGGGATKERVVEAFKIILSDDNVKAVLINIFGGIVRCDLIAEGVIGAVEEVGVKVPVVVRLEGNNAELGAKVLADSGLNIIAAESLTD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_RHOPS (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Rhodopseudomonas palustris (strain BisB5) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.884e-49
Identity = 94/141 (66.67%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            T+ED +E+ A+K DLNY+ LDG IGCMVNGAGLAMATMDIIKL+G TPANFLDVGG AS+ +V  AFKI+T+D  V  IL+NIFGGIMKCD+IA G+V A K+V L VP+VVRLEGTNV+ G +I+K SG+ ++ A++LDD
Sbjct:  246 TEEDAKEIEASKYDLNYVTLDGTIGCMVNGAGLAMATMDIIKLYGMTPANFLDVGGGASKEKVTAAFKIITADPNVKGILINIFGGIMKCDIIAEGVVAAVKEVGLDVPLVVRLEGTNVEAGKKIIKHSGLNVLPADNLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_GEOSW (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Geobacillus sp. (strain WCH70) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.884e-49
Identity = 97/140 (69.29%), Postives = 113/140 (80.71%), Query Frame = -2
Query:  268 QEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 687
            +EDP+EV A+K DLNYI LDG IGCMVNGAGLAMATMDIIK +GG PANFLDVGG A+  +V EAFKI+ SD  V  I VNIFGGIMKCDVIASGIV A KQV L +P+VVRLEGTNV+ G +IL+ESG+ +  A+ + D
Sbjct:  237 EEDPKEVEASKYDLNYIALDGNIGCMVNGAGLAMATMDIIKYYGGEPANFLDVGGGATAEKVTEAFKIILSDPNVKGIFVNIFGGIMKCDVIASGIVEATKQVGLNLPLVVRLEGTNVELGKKILQESGLNITAADSMAD 376          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BART1 (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=sucC PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.884e-49
Identity = 94/141 (66.67%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++EDP+E+ A+K DL Y+ L+G IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIM+CDVIA G+V A ++V LKVP+VVRLEGTNV+QG  I+ +SG+ +I A+DLDD
Sbjct:  246 SEEDPKEIEASKHDLAYVALEGTIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPNVKGILVNIFGGIMRCDVIAEGVVAAVREVGLKVPLVVRLEGTNVEQGKAIINDSGLNVIPADDLDD 386          
BLAST of CF832371 vs. ExPASy Swiss-Prot
Match: SUCC_BARHE (Succinyl-CoA ligase [ADP-forming] subunit beta OS=Bartonella henselae GN=sucC PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 5.884e-49
Identity = 94/141 (66.67%), Postives = 117/141 (82.98%), Query Frame = -2
Query:  268 TQEDPREVAAAKADLNYIGLDGEIGCMVNGAGLAMATMDIIKLHGGTPANFLDVGGNASEGQVVEAFKILTSDEKVIAILVNIFGGIMKCDVIASGIVNAAKQVALKVPVVVRLEGTNVDQG*RILKESGMTLITAEDLDD 690
            ++EDP+E+ A+K DL Y+ L+G IGCMVNGAGLAMATMDIIKL+G  PANFLDVGG AS+ +V  AFKI+T+D  V  ILVNIFGGIM+CDVIA G+V A ++V LKVP+VVRLEGTNV+QG  I+ +SG+ +I A+DLDD
Sbjct:  246 SEEDPKEIEASKHDLAYVALEGTIGCMVNGAGLAMATMDIIKLYGAEPANFLDVGGGASKEKVTAAFKIITADPNVKGILVNIFGGIMRCDVIAEGVVAAVREVGLKVPLVVRLEGTNVEQGKAIISDSGLNVIPADDLDD 386          
The following BLAST results are available for this feature:
BLAST of CF832371 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
SUCC_STRMK4.505e-4963.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_STRM54.505e-4963.83Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_PARL14.505e-4968.09Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_MESSB4.505e-4966.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_CAUSK4.505e-4966.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_SACD25.884e-4964.08Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_RHOPS5.884e-4966.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_GEOSW5.884e-4969.29Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BART15.884e-4966.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]
SUCC_BARHE5.884e-4966.67Succinyl-CoA ligase [ADP-forming] subunit beta OS=... [more]

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Properties
Property NameValue
Genbank descriptionUCRCS02_01M04_r Ruby Orange Ovary at Anthesis cDNA Library Citrus sinensis cDNA clone CS_REa01M04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CF832371 ID=CF832371; Name=CF832371; organism=Citrus sinensis; type=EST; length=694bp
TTTTTTTTACCACATAATTTAATTGAGGTGTCATAAATTTATAATACTCT
ATGAAACACCGCAATAATCAGAGCCATGAAACGTCAAATCTTGAAAGACA
ATTGAAGAATGTTTCCTCATTCCTGCTTTTTATCAACAGCAAAGATTCAA
TGCACTCAATTTTACCAAAATTCTTTAAAATTCTGAAGCTTGTGAAGAAT
GGGAGCAGTACACTTGTATATTTGATTTTTTTCAACTGGCTATAGCTTTA
ACTGCTTTCTCAGCAGCATCATCAAGATCTTCTGCTGTTATTAGAGTCAT
ACCACTTTCCTTAAGTATTCTCTATCCCTGGTCAACATTGGTGCCTTCAA
GACGAACCACCACTGGTACTTTGAGTGCAACTTGTTTAGCAGCATTGACA
ATTCCACTGGCTATTACATCACATTTCATGATTCCTCCAAATATGTTCAC
CAAGATTGCTATGACTTTCTCATCAGAAGTCAAAATTTTAAATGCCTCAA
CCACCTGGCCCTCAGAAGCATTACCACCAACATCCAGGAAATTGGCAGGA
GTTCCACCATGTAATTTGATTATATCCATTGTAGCCATAGCTAATCCTGC
ACCATTCACCATGCAACCAATTTCTCCATCCAAGCCAATGTAATTTAAAT
CAGCTTTGGCAGCAGCCACCTCTCGAGGATCCTCTTGCGTTGGG
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